PP283_ARATH
ID PP283_ARATH Reviewed; 351 AA.
AC Q9LY43;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g56030, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At3g56030; ORFNames=F27K19_210;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2-351.
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 16-351.
RC STRAIN=cv. Columbia;
RA Quinitio C., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [7]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND CLEAVAGE OF TRANSIT PEPTIDE AFTER
RP PHE-41.
RX PubMed=25732537; DOI=10.1093/jxb/erv064;
RA Carrie C., Venne A.S., Zahedi R.P., Soll J.;
RT "Identification of cleavage sites and substrate proteins for two
RT mitochondrial intermediate peptidases in Arabidopsis thaliana.";
RL J. Exp. Bot. 66:2691-2708(2015).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305|PubMed:25732537}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC42214.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=BX822863; Type=Erroneous termination; Note=Truncated C-terminus.; Evidence={ECO:0000305};
CC Sequence=CAB87857.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AL163832; CAB87857.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002686; AEE79468.1; -; Genomic_DNA.
DR EMBL; BX822863; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AK117553; BAC42214.1; ALT_INIT; mRNA.
DR EMBL; BT028936; ABI49483.1; -; mRNA.
DR PIR; T49215; T49215.
DR RefSeq; NP_191162.2; NM_115461.3.
DR AlphaFoldDB; Q9LY43; -.
DR SMR; Q9LY43; -.
DR BioGRID; 10085; 1.
DR IntAct; Q9LY43; 1.
DR PaxDb; Q9LY43; -.
DR PRIDE; Q9LY43; -.
DR ProteomicsDB; 249115; -.
DR EnsemblPlants; AT3G56030.1; AT3G56030.1; AT3G56030.
DR GeneID; 824769; -.
DR Gramene; AT3G56030.1; AT3G56030.1; AT3G56030.
DR KEGG; ath:AT3G56030; -.
DR Araport; AT3G56030; -.
DR TAIR; locus:2082023; AT3G56030.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_832474_0_0_1; -.
DR InParanoid; Q9LY43; -.
DR OMA; TFKFIST; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LY43; -.
DR PRO; PR:Q9LY43; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LY43; baseline and differential.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF12854; PPR_1; 1.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 5.
PE 1: Evidence at protein level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..41
FT /note="Mitochondrion"
FT /evidence="ECO:0000269|PubMed:25732537"
FT CHAIN 42..351
FT /note="Pentatricopeptide repeat-containing protein
FT At3g56030, mitochondrial"
FT /id="PRO_0000356142"
FT REPEAT 124..158
FT /note="PPR 1"
FT REPEAT 159..193
FT /note="PPR 2"
FT REPEAT 194..224
FT /note="PPR 3"
FT REPEAT 232..266
FT /note="PPR 4"
FT CONFLICT 229
FT /note="M -> L (in Ref. 3)"
FT /evidence="ECO:0000305"
FT CONFLICT 232
FT /note="D -> N (in Ref. 3)"
FT /evidence="ECO:0000305"
FT CONFLICT 287
FT /note="S -> I (in Ref. 3)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 351 AA; 39659 MW; 5566C96A20DBBC01 CRC64;
MFRLKPLISV DLNQTMSLLR RFVKEANNSR FLLQSISGRS FSTVNPNPTA SPGRRTCVEF
DNLIFKAGSS GDFEAVRRLL NSRVVNACFN TTATFKFLTN TDSYSSSLED LRRILPQTDA
GYTRKHSYET LIARLCKLGR IDDALVLIND MAIGEFGLST CVFHPILNTL TKKNRIEEAW
RVVELMRSHA IPVDVTSYNY FLTSHCYDGD VAEASRVLRK MEEEEEGVMS PDTRTYDALV
LGACKSGRVE AAMAILRRME EEGLSVLYAT HAHVIGEMVE SGYYALSVEF VMAYAGKDKR
LDEENLGSLA SKLIKRKRFK EAKMVLKEMS VRGLRMGDAL REFHEKNVLQ S
