PP284_ARATH
ID PP284_ARATH Reviewed; 581 AA.
AC Q9LXY5;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g56550;
GN Name=PCMP-H80; OrderedLocusNames=At3g56550; ORFNames=T5P19_200;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL163972; CAB88058.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79534.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM63885.1; -; Genomic_DNA.
DR EMBL; DQ446769; ABE66020.1; -; mRNA.
DR PIR; T49056; T49056.
DR RefSeq; NP_001319768.1; NM_001339801.1.
DR RefSeq; NP_191214.1; NM_115513.3.
DR AlphaFoldDB; Q9LXY5; -.
DR SMR; Q9LXY5; -.
DR PaxDb; Q9LXY5; -.
DR PRIDE; Q9LXY5; -.
DR ProteomicsDB; 249195; -.
DR EnsemblPlants; AT3G56550.1; AT3G56550.1; AT3G56550.
DR EnsemblPlants; AT3G56550.2; AT3G56550.2; AT3G56550.
DR GeneID; 824822; -.
DR Gramene; AT3G56550.1; AT3G56550.1; AT3G56550.
DR Gramene; AT3G56550.2; AT3G56550.2; AT3G56550.
DR KEGG; ath:AT3G56550; -.
DR Araport; AT3G56550; -.
DR TAIR; locus:2102514; AT3G56550.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_8_1; -.
DR InParanoid; Q9LXY5; -.
DR OMA; CGCSHQG; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LXY5; -.
DR PRO; PR:Q9LXY5; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LXY5; baseline and differential.
DR Genevisible; Q9LXY5; AT.
DR GO; GO:0009507; C:chloroplast; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:1900865; P:chloroplast RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 8.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..581
FT /note="Pentatricopeptide repeat-containing protein
FT At3g56550"
FT /id="PRO_0000356143"
FT REPEAT 70..104
FT /note="PPR 1"
FT REPEAT 106..140
FT /note="PPR 2"
FT REPEAT 141..171
FT /note="PPR 3"
FT REPEAT 172..206
FT /note="PPR 4"
FT REPEAT 207..241
FT /note="PPR 5"
FT REPEAT 242..272
FT /note="PPR 6"
FT REPEAT 273..307
FT /note="PPR 7"
FT REPEAT 308..338
FT /note="PPR 8"
FT REPEAT 344..378
FT /note="PPR 9"
FT REGION 379..454
FT /note="Type E motif"
FT REGION 455..485
FT /note="Type E(+) motif"
FT REGION 486..581
FT /note="Type DYW motif"
SQ SEQUENCE 581 AA; 64887 MW; BE941B15A436F104 CRC64;
MCEKARVIVR MLQGCNSMKK LRKIHSHVII NGLQHHPSIF NHLLRFCAVS VTGSLSHAQL
LFDHFDSDPS TSDWNYLIRG FSNSSSPLNS ILFYNRMLLS SVSRPDLFTF NFALKSCERI
KSIPKCLEIH GSVIRSGFLD DAIVATSLVR CYSANGSVEI ASKVFDEMPV RDLVSWNVMI
CCFSHVGLHN QALSMYKRMG NEGVCGDSYT LVALLSSCAH VSALNMGVML HRIACDIRCE
SCVFVSNALI DMYAKCGSLE NAIGVFNGMR KRDVLTWNSM IIGYGVHGHG VEAISFFRKM
VASGVRPNAI TFLGLLLGCS HQGLVKEGVE HFEIMSSQFH LTPNVKHYGC MVDLYGRAGQ
LENSLEMIYA SSCHEDPVLW RTLLGSCKIH RNLELGEVAM KKLVQLEAFN AGDYVLMTSI
YSAANDAQAF ASMRKLIRSH DLQTVPGWSW IEIGDQVHKF VVDDKMHPES AVIYSELGEV
INRAILAGYK PEDSNRTAPT LSDRCLGSAD TSHSEKLAIA YGLMRTTAGT TLRITKNLRV
CRDCHSFTKY VSKAFNREII VRDRVRFHHF ADGICSCNDY W
