PP285_ARATH
ID PP285_ARATH Reviewed; 890 AA.
AC Q7Y211; Q9SCM9;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 25-MAY-2022, entry version 107.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g57430, chloroplastic;
DE AltName: Full=Protein ORGANELLE TRANSCRIPT PROCESSING 84 {ECO:0000303|PubMed:19934379};
DE Flags: Precursor;
GN Name=PCMP-H81; Synonyms=OTP84 {ECO:0000303|PubMed:19934379};
GN OrderedLocusNames=At3g57430; ORFNames=T8H10.30;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [5]
RP FUNCTION, SUBCELLULAR LOCATION, AND DISRUPTION PHENOTYPE.
RX PubMed=19934379; DOI=10.1105/tpc.109.071472;
RA Hammani K., Okuda K., Tanz S.K., Chateigner-Boutin A.L., Shikanai T.,
RA Small I.;
RT "A study of new Arabidopsis chloroplast RNA editing mutants reveals general
RT features of editing factors and their target sites.";
RL Plant Cell 21:3686-3699(2009).
CC -!- FUNCTION: Involved in RNA editing events in chloroplasts. Required for
CC the editing of a single site in ndhB and ndhF transcripts, which are
CC two plastid-encoded subunits of the chloroplast NAD(P)H dehydrogenase
CC (NDH) complex. Required for the editing of a single site in psbZ.
CC Required for optimal activity of the NDH complex of the photosynthetic
CC electron transport chain. {ECO:0000269|PubMed:19934379}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000269|PubMed:19934379}.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
CC conditions. {ECO:0000269|PubMed:19934379}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB66100.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL133248; CAB66100.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002686; AEE79654.1; -; Genomic_DNA.
DR EMBL; BT008634; AAP40452.1; -; mRNA.
DR PIR; T46179; T46179.
DR RefSeq; NP_191302.2; NM_115603.4.
DR AlphaFoldDB; Q7Y211; -.
DR SMR; Q7Y211; -.
DR STRING; 3702.AT3G57430.1; -.
DR PaxDb; Q7Y211; -.
DR PRIDE; Q7Y211; -.
DR ProteomicsDB; 249196; -.
DR EnsemblPlants; AT3G57430.1; AT3G57430.1; AT3G57430.
DR GeneID; 824910; -.
DR Gramene; AT3G57430.1; AT3G57430.1; AT3G57430.
DR KEGG; ath:AT3G57430; -.
DR Araport; AT3G57430; -.
DR TAIR; locus:2103483; AT3G57430.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; Q7Y211; -.
DR OMA; ACSHLEM; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q7Y211; -.
DR PRO; PR:Q7Y211; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q7Y211; baseline and differential.
DR Genevisible; Q7Y211; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0031425; P:chloroplast RNA processing; IMP:TAIR.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 3.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 17.
PE 2: Evidence at transcript level;
KW Chloroplast; mRNA processing; Plastid; Reference proteome; Repeat;
KW Transit peptide.
FT TRANSIT 1..44
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 45..890
FT /note="Pentatricopeptide repeat-containing protein
FT At3g57430, chloroplastic"
FT /evidence="ECO:0000255"
FT /id="PRO_0000356144"
FT REPEAT 61..95
FT /note="PPR 1"
FT REPEAT 96..130
FT /note="PPR 2"
FT REPEAT 132..162
FT /note="PPR 3"
FT REPEAT 163..197
FT /note="PPR 4"
FT REPEAT 198..231
FT /note="PPR 5"
FT REPEAT 235..265
FT /note="PPR 6"
FT REPEAT 266..300
FT /note="PPR 7"
FT REPEAT 301..335
FT /note="PPR 8"
FT REPEAT 337..371
FT /note="PPR 9"
FT REPEAT 372..398
FT /note="PPR 10"
FT REPEAT 404..438
FT /note="PPR 11"
FT REPEAT 439..473
FT /note="PPR 12"
FT REPEAT 474..504
FT /note="PPR 13"
FT REPEAT 516..550
FT /note="PPR 14"
FT REPEAT 551..581
FT /note="PPR 15"
FT REPEAT 582..616
FT /note="PPR 16"
FT REPEAT 617..652
FT /note="PPR 17"
FT REPEAT 653..683
FT /note="PPR 18"
FT REGION 689..764
FT /note="Type E motif"
FT REGION 765..795
FT /note="Type E(+) motif"
FT REGION 796..890
FT /note="Type DYW motif"
FT CONFLICT 17
FT /note="F -> L (in Ref. 3; AAP40452)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 890 AA; 99276 MW; 3183E11DC3EBCED1 CRC64;
MSCPLAFTFS LPSIFPFPSQ LLPFSRHKHP YLLRATPTSA TEDVASAVSG APSIFISQSR
SPEWWIDLLR SKVRSNLLRE AVLTYVDMIV LGIKPDNYAF PALLKAVADL QDMELGKQIH
AHVYKFGYGV DSVTVANTLV NLYRKCGDFG AVYKVFDRIS ERNQVSWNSL ISSLCSFEKW
EMALEAFRCM LDENVEPSSF TLVSVVTACS NLPMPEGLMM GKQVHAYGLR KGELNSFIIN
TLVAMYGKLG KLASSKVLLG SFGGRDLVTW NTVLSSLCQN EQLLEALEYL REMVLEGVEP
DEFTISSVLP ACSHLEMLRT GKELHAYALK NGSLDENSFV GSALVDMYCN CKQVLSGRRV
FDGMFDRKIG LWNAMIAGYS QNEHDKEALL LFIGMEESAG LLANSTTMAG VVPACVRSGA
FSRKEAIHGF VVKRGLDRDR FVQNTLMDMY SRLGKIDIAM RIFGKMEDRD LVTWNTMITG
YVFSEHHEDA LLLLHKMQNL ERKVSKGASR VSLKPNSITL MTILPSCAAL SALAKGKEIH
AYAIKNNLAT DVAVGSALVD MYAKCGCLQM SRKVFDQIPQ KNVITWNVII MAYGMHGNGQ
EAIDLLRMMM VQGVKPNEVT FISVFAACSH SGMVDEGLRI FYVMKPDYGV EPSSDHYACV
VDLLGRAGRI KEAYQLMNMM PRDFNKAGAW SSLLGASRIH NNLEIGEIAA QNLIQLEPNV
ASHYVLLANI YSSAGLWDKA TEVRRNMKEQ GVRKEPGCSW IEHGDEVHKF VAGDSSHPQS
EKLSGYLETL WERMRKEGYV PDTSCVLHNV EEDEKEILLC GHSEKLAIAF GILNTSPGTI
IRVAKNLRVC NDCHLATKFI SKIVDREIIL RDVRRFHRFK NGTCSCGDYW
