PP287_ARATH
ID PP287_ARATH Reviewed; 583 AA.
AC Q9LYT2;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g59040;
GN OrderedLocusNames=At3g59040; ORFNames=F17J16_90;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND NUCLEOTIDE SEQUENCE [LARGE
RP SCALE MRNA] OF 58-583.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q9LYT2-1; Sequence=Displayed;
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AY080770; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=CAB86932.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL163527; CAB86932.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE79865.1; -; Genomic_DNA.
DR EMBL; AY080770; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; BT000951; AAN41351.1; -; mRNA.
DR PIR; T47786; T47786.
DR RefSeq; NP_191463.2; NM_115766.4. [Q9LYT2-1]
DR AlphaFoldDB; Q9LYT2; -.
DR SMR; Q9LYT2; -.
DR STRING; 3702.AT3G59040.2; -.
DR PaxDb; Q9LYT2; -.
DR PRIDE; Q9LYT2; -.
DR ProteomicsDB; 248963; -. [Q9LYT2-1]
DR EnsemblPlants; AT3G59040.1; AT3G59040.1; AT3G59040. [Q9LYT2-1]
DR GeneID; 825073; -.
DR Gramene; AT3G59040.1; AT3G59040.1; AT3G59040. [Q9LYT2-1]
DR KEGG; ath:AT3G59040; -.
DR Araport; AT3G59040; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_15_1; -.
DR InParanoid; Q9LYT2; -.
DR OMA; NWRRLMN; -.
DR PhylomeDB; Q9LYT2; -.
DR PRO; PR:Q9LYT2; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LYT2; baseline and differential.
DR Genevisible; Q9LYT2; AT.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 2.
DR Pfam; PF13812; PPR_3; 2.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 9.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome; Repeat.
FT CHAIN 1..583
FT /note="Pentatricopeptide repeat-containing protein
FT At3g59040"
FT /id="PRO_0000356146"
FT REPEAT 138..172
FT /note="PPR 1"
FT REPEAT 173..207
FT /note="PPR 2"
FT REPEAT 208..242
FT /note="PPR 3"
FT REPEAT 246..280
FT /note="PPR 4"
FT REPEAT 281..312
FT /note="PPR 5"
FT REPEAT 313..347
FT /note="PPR 6"
FT REPEAT 348..382
FT /note="PPR 7"
FT REPEAT 383..417
FT /note="PPR 8"
FT REPEAT 418..452
FT /note="PPR 9"
FT REPEAT 453..487
FT /note="PPR 10"
FT REGION 525..583
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 530..557
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 583 AA; 66161 MW; 2DDEEAE114C18B56 CRC64;
MSQAVIFKPF VSVPSSNHSQ RKLQNNIINV GVKIQNRFRV VCMGMLAPRK FLQKRRKMEV
FKDAADETDQ KRWRGLMLEI ESTGSAVPVL RQYKTDGDQG LPRDLVLGTL VRFKQLKKWN
LVSEILEWLR YQNWWNFSEI DFLMLITAYG KLGNFNGAER VLSVLSKMGS TPNVISYTAL
MESYGRGGKC NNAEAIFRRM QSSGPEPSAI TYQIILKTFV EGDKFKEAEE VFETLLDEKK
SPLKPDQKMY HMMIYMYKKA GNYEKARKVF SSMVGKGVPQ STVTYNSLMS FETSYKEVSK
IYDQMQRSDI QPDVVSYALL IKAYGRARRE EEALSVFEEM LDAGVRPTHK AYNILLDAFA
ISGMVEQAKT VFKSMRRDRI FPDLWSYTTM LSAYVNASDM EGAEKFFKRI KVDGFEPNIV
TYGTLIKGYA KANDVEKMME VYEKMRLSGI KANQTILTTI MDASGRCKNF GSALGWYKEM
ESCGVPPDQK AKNVLLSLAS TQDELEEAKE LTGIRNETAT IIARVYGSDD DEEGVEDISS
ESSDDEDEGD DDDDDARETV LYDKPQEGSL GYGSLQTEEL VGL
