PP288_ARATH
ID PP288_ARATH Reviewed; 473 AA.
AC Q9M1D8;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g60050;
GN OrderedLocusNames=At3g60050; ORFNames=T2O9.30;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL138658; CAB75920.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE80006.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM64964.1; -; Genomic_DNA.
DR PIR; T47829; T47829.
DR RefSeq; NP_001326964.1; NM_001340016.1.
DR RefSeq; NP_191564.1; NM_115868.3.
DR AlphaFoldDB; Q9M1D8; -.
DR SMR; Q9M1D8; -.
DR PaxDb; Q9M1D8; -.
DR PRIDE; Q9M1D8; -.
DR ProteomicsDB; 248964; -.
DR EnsemblPlants; AT3G60050.1; AT3G60050.1; AT3G60050.
DR EnsemblPlants; AT3G60050.2; AT3G60050.2; AT3G60050.
DR GeneID; 825175; -.
DR Gramene; AT3G60050.1; AT3G60050.1; AT3G60050.
DR Gramene; AT3G60050.2; AT3G60050.2; AT3G60050.
DR KEGG; ath:AT3G60050; -.
DR Araport; AT3G60050; -.
DR TAIR; locus:2101422; AT3G60050.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_25_1; -.
DR InParanoid; Q9M1D8; -.
DR OMA; YFLDEMV; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9M1D8; -.
DR PRO; PR:Q9M1D8; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9M1D8; baseline and differential.
DR Genevisible; Q9M1D8; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 2.
DR Pfam; PF13812; PPR_3; 2.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 9.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..473
FT /note="Pentatricopeptide repeat-containing protein
FT At3g60050"
FT /id="PRO_0000356147"
FT REPEAT 148..182
FT /note="PPR 1"
FT REPEAT 183..217
FT /note="PPR 2"
FT REPEAT 218..252
FT /note="PPR 3"
FT REPEAT 253..287
FT /note="PPR 4"
FT REPEAT 288..322
FT /note="PPR 5"
FT REPEAT 323..357
FT /note="PPR 6"
FT REPEAT 358..392
FT /note="PPR 7"
FT REPEAT 393..427
FT /note="PPR 8"
FT REPEAT 428..462
FT /note="PPR 9"
SQ SEQUENCE 473 AA; 54221 MW; D32A527DE37EBD26 CRC64;
MNLALVLGTN VVRKAYRFLF ISRKFCNGNF GGNEIDNGFP DLDCGFDEDS NISELRSIDR
EVISVRSRFL ESANHSASRV LVTLQLDESG FNSKSVLDEL NVRVSGLLVR EVLVGILRNL
SYDNKARCAK LAYRFFLWSG EQECFRHTVN SYHLLMKIFA ECGEYKAMWR LVDEMVQDGF
PTTARTFNLL ICSCGEAGLA KQAVVQFMKS KTFNYRPFKH SYNAILNSLL GVKQYKLIEW
VYKQMLEDGF SPDVLTYNIL LWTNYRLGKM DRFDRLFDEM ARDGFSPDSY TYNILLHILG
KGNKPLAALT TLNHMKEVGI DPSVLHYTTL IDGLSRAGNL EACKYFLDEM VKAGCRPDVV
CYTVMITGYV VSGELDKAKE MFREMTVKGQ LPNVFTYNSM IRGLCMAGEF REACWLLKEM
ESRGCNPNFV VYSTLVSYLR KAGKLSEARK VIREMVKKGH YVHLVPKMMK YRR
