ID   PP289_ARATH             Reviewed;         403 AA.
AC   Q9LEX6;
DT   16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT   16-DEC-2008, sequence version 2.
DT   03-AUG-2022, entry version 101.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At3g60960, mitochondrial;
DE   Flags: Precursor;
GN   OrderedLocusNames=At3g60960; ORFNames=T27I15_50;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130713; DOI=10.1038/35048706;
RA   Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA   Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA   Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA   Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA   Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA   Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA   Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA   Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA   Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA   Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA   Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA   Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA   de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA   Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA   Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA   Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA   Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA   Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA   Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA   Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA   Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA   Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA   Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA   Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT   "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL   Nature 408:820-822(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14993207; DOI=10.1101/gr.1515604;
RA   Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA   Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA   Weissenbach J., Salanoubat M.;
RT   "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT   combined approach to evaluate and improve Arabidopsis genome annotation.";
RL   Genome Res. 14:406-413(2004).
RN   [4]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=CAB94132.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AL358732; CAB94132.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; CP002686; AEE80130.1; -; Genomic_DNA.
DR   EMBL; CP002686; ANM63862.1; -; Genomic_DNA.
DR   EMBL; CP002686; ANM63863.1; -; Genomic_DNA.
DR   EMBL; BX824462; -; NOT_ANNOTATED_CDS; mRNA.
DR   PIR; T50517; T50517.
DR   RefSeq; NP_001325929.1; NM_001340066.1.
DR   RefSeq; NP_001325930.1; NM_001340065.1.
DR   RefSeq; NP_191655.2; NM_115960.3.
DR   AlphaFoldDB; Q9LEX6; -.
DR   SMR; Q9LEX6; -.
DR   STRING; 3702.AT3G60960.1; -.
DR   PaxDb; Q9LEX6; -.
DR   PRIDE; Q9LEX6; -.
DR   ProteomicsDB; 248965; -.
DR   EnsemblPlants; AT3G60960.1; AT3G60960.1; AT3G60960.
DR   EnsemblPlants; AT3G60960.2; AT3G60960.2; AT3G60960.
DR   EnsemblPlants; AT3G60960.3; AT3G60960.3; AT3G60960.
DR   GeneID; 825268; -.
DR   Gramene; AT3G60960.1; AT3G60960.1; AT3G60960.
DR   Gramene; AT3G60960.2; AT3G60960.2; AT3G60960.
DR   Gramene; AT3G60960.3; AT3G60960.3; AT3G60960.
DR   KEGG; ath:AT3G60960; -.
DR   Araport; AT3G60960; -.
DR   TAIR; locus:2100977; AT3G60960.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_036660_1_0_1; -.
DR   InParanoid; Q9LEX6; -.
DR   OMA; DIMSEYF; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q9LEX6; -.
DR   PRO; PR:Q9LEX6; -.
DR   Proteomes; UP000006548; Chromosome 3.
DR   ExpressionAtlas; Q9LEX6; baseline and differential.
DR   GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR   Gene3D; 1.25.40.10; -; 3.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF01535; PPR; 6.
DR   SUPFAM; SSF48452; SSF48452; 1.
DR   TIGRFAMs; TIGR00756; PPR; 3.
DR   PROSITE; PS51375; PPR; 7.
PE   2: Evidence at transcript level;
KW   Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..18
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           19..403
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At3g60960, mitochondrial"
FT                   /id="PRO_0000356148"
FT   REPEAT          87..121
FT                   /note="PPR 1"
FT   REPEAT          123..157
FT                   /note="PPR 2"
FT   REPEAT          159..189
FT                   /note="PPR 3"
FT   REPEAT          190..224
FT                   /note="PPR 4"
FT   REPEAT          233..263
FT                   /note="PPR 5"
FT   REPEAT          267..297
FT                   /note="PPR 6"
FT   REPEAT          321..351
FT                   /note="PPR 7"
FT   REPEAT          362..396
FT                   /note="PPR 8"
SQ   SEQUENCE   403 AA;  45506 MW;  8D7B1516F9A62CE7 CRC64;
     MSLLRRIVRN STVSKAVPVA KAFMPYPLGR DPSSLPKLDP VSISYIDSRP ISLRYRVRAM
     IEMSNLDEAS KLSRLAVLNG FLVDRDTVFI CNSVIGAMCS AKRYDDAISL FNYFFNESQT
     LPNTLSCDLI IKAHCDQGHV DDALELYRHI LLDGRVAPGI ETYMILAKAL VDAKRFDEAC
     VLARSMSCCS FMVYDILIRG FLDIGNFVKA SQIFEELKGL DSKLPGREYH KANAIFNVSF
     MNYWFKQGKD EEAMEILANL EDAQVLNPIV GNRVLQVLVK HGKKTEAWEL FGEMIEICDS
     ETVDIMSEYF SEKTVPFERL RKTCYRKMIV SLCEHGKVSD AEKLFAEMFT DVDGGDLLVG
     PDLLIFRAMI NGYVSVGRVD DAIKTLNKMR ISNLRKLAIH QAP