PP290_ARATH
ID PP290_ARATH Reviewed; 412 AA.
AC Q9LEX5;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g60980, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At3g60980; ORFNames=T27I15_70;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL358732; CAB94134.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE80134.1; -; Genomic_DNA.
DR EMBL; AY081333; AAL91222.1; -; mRNA.
DR EMBL; BT002139; AAN72150.1; -; mRNA.
DR PIR; T50519; T50519.
DR RefSeq; NP_191657.1; NM_115962.4.
DR AlphaFoldDB; Q9LEX5; -.
DR SMR; Q9LEX5; -.
DR STRING; 3702.AT3G60980.1; -.
DR SwissPalm; Q9LEX5; -.
DR PaxDb; Q9LEX5; -.
DR PRIDE; Q9LEX5; -.
DR ProteomicsDB; 248966; -.
DR EnsemblPlants; AT3G60980.1; AT3G60980.1; AT3G60980.
DR GeneID; 825270; -.
DR Gramene; AT3G60980.1; AT3G60980.1; AT3G60980.
DR KEGG; ath:AT3G60980; -.
DR Araport; AT3G60980; -.
DR TAIR; locus:2101002; AT3G60980.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_036660_1_0_1; -.
DR OMA; HHSNYEN; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LEX5; -.
DR PRO; PR:Q9LEX5; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LEX5; baseline and differential.
DR Genevisible; Q9LEX5; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0006979; P:response to oxidative stress; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 1.
DR PROSITE; PS51375; PPR; 7.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..18
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 19..412
FT /note="Pentatricopeptide repeat-containing protein
FT At3g60980, mitochondrial"
FT /id="PRO_0000356149"
FT REPEAT 69..104
FT /note="PPR 1"
FT REPEAT 105..139
FT /note="PPR 2"
FT REPEAT 143..178
FT /note="PPR 3"
FT REPEAT 179..213
FT /note="PPR 4"
FT REPEAT 230..264
FT /note="PPR 5"
FT REPEAT 266..296
FT /note="PPR 6"
FT REPEAT 305..339
FT /note="PPR 7"
FT REPEAT 344..371
FT /note="PPR 8"
FT REPEAT 373..407
FT /note="PPR 9"
SQ SEQUENCE 412 AA; 47368 MW; D90D2C3BA3CE452C CRC64;
MSLIGRLNLG RRFCTAVPRR SEDIMSNPDC RPSDLCLRVS YLIRCVGDLD TAAKYARLAV
FTSIKSESTT TICQSIIGGM LRDKRLKDAY DLYEFFFNQH NLRPNSHCWN YIIESGFQQG
LVNDALHFHH RCINSGQVHD YPSDDSFRIL TKGLVHSGRL DQAEAFLRGR TVNRTTYPDH
VAYNNLIRGF LDLGNFKKAN LVLGEFKRLF LIALSETKDD LHHSNYENRV AFLMATFMEY
WFKQGKQVEA MECYNRCVLS NRLLVCAETG NALLKVLLKY GEKKNAWALY HELLDKNGTG
KGCLDSDTIK IMVDECFDMG WFSEAMETYK KARPKNDYLS DKYIITRFCE NRMLSEAESV
FVDSLADDFG YIDVNTYKTM IDAYVKAGRI HDAIKTSNKM IDATLKEVSH LF
