PP293_ARATH
ID PP293_ARATH Reviewed; 599 AA.
AC Q9LZP3;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g62470, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At3g62470; ORFNames=T12C14_170;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL162507; CAB82961.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE80356.1; -; Genomic_DNA.
DR EMBL; BT010478; AAQ65101.1; -; mRNA.
DR PIR; T48039; T48039.
DR RefSeq; NP_191806.1; NM_116112.3.
DR AlphaFoldDB; Q9LZP3; -.
DR SMR; Q9LZP3; -.
DR STRING; 3702.AT3G62470.1; -.
DR PaxDb; Q9LZP3; -.
DR PRIDE; Q9LZP3; -.
DR ProteomicsDB; 249200; -.
DR EnsemblPlants; AT3G62470.1; AT3G62470.1; AT3G62470.
DR GeneID; 825421; -.
DR Gramene; AT3G62470.1; AT3G62470.1; AT3G62470.
DR KEGG; ath:AT3G62470; -.
DR Araport; AT3G62470; -.
DR TAIR; locus:2096099; AT3G62470.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_20_1; -.
DR InParanoid; Q9LZP3; -.
DR OMA; WDEMREN; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LZP3; -.
DR PRO; PR:Q9LZP3; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LZP3; baseline and differential.
DR Genevisible; Q9LZP3; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF17177; PPR_long; 1.
DR TIGRFAMs; TIGR00756; PPR; 9.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..99
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 100..599
FT /note="Pentatricopeptide repeat-containing protein
FT At3g62470, mitochondrial"
FT /id="PRO_0000356152"
FT REPEAT 194..228
FT /note="PPR 1"
FT REPEAT 230..262
FT /note="PPR 2"
FT REPEAT 263..293
FT /note="PPR 3"
FT REPEAT 297..331
FT /note="PPR 4"
FT REPEAT 332..366
FT /note="PPR 5"
FT REPEAT 367..401
FT /note="PPR 6"
FT REPEAT 402..436
FT /note="PPR 7"
FT REPEAT 437..471
FT /note="PPR 8"
FT REPEAT 472..506
FT /note="PPR 9"
FT REPEAT 507..541
FT /note="PPR 10"
SQ SEQUENCE 599 AA; 68562 MW; BD4050DDA8D7E112 CRC64;
MAAAPWLHLS RRRSSTQTSL RSFLICSSSF DSDEFISSQS RVIGGRGEEE VRFSGALFSR
MIHSSTYHPY RQIPLPHSSV QLLDASLGCR GFSSGSSNVS DGCDEEVESE CDNDEETGVS
CVESSTNPEE VERVCKVIDE LFALDRNMEA VLDEMKLDLS HDLIVEVLER FRHARKPAFR
FFCWAAERQG FAHDSRTYNS MMSILAKTRQ FETMVSVLEE MGTKGLLTME TFTIAMKAFA
AAKERKKAVG IFELMKKYKF KIGVETINCL LDSLGRAKLG KEAQVLFDKL KERFTPNMMT
YTVLLNGWCR VRNLIEAARI WNDMIDQGLK PDIVAHNVML EGLLRSRKKS DAIKLFHVMK
SKGPCPNVRS YTIMIRDFCK QSSMETAIEY FDDMVDSGLQ PDAAVYTCLI TGFGTQKKLD
TVYELLKEMQ EKGHPPDGKT YNALIKLMAN QKMPEHATRI YNKMIQNEIE PSIHTFNMIM
KSYFMARNYE MGRAVWEEMI KKGICPDDNS YTVLIRGLIG EGKSREACRY LEEMLDKGMK
TPLIDYNKFA ADFHRGGQPE IFEELAQRAK FSGKFAAAEI FARWAQMTRR RFKQRFMED
