PP294_ARATH
ID PP294_ARATH Reviewed; 599 AA.
AC Q3EAF8; Q9LZN6;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 08-NOV-2005, sequence version 1.
DT 03-AUG-2022, entry version 91.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g62540, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At3g62540; ORFNames=T12C14_240;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] OF 292-599.
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL162507; CAB82968.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE80362.1; -; Genomic_DNA.
DR PIR; T48046; T48046.
DR RefSeq; NP_191813.1; NM_116119.3.
DR AlphaFoldDB; Q3EAF8; -.
DR SMR; Q3EAF8; -.
DR iPTMnet; Q3EAF8; -.
DR PaxDb; Q3EAF8; -.
DR PRIDE; Q3EAF8; -.
DR ProteomicsDB; 249201; -.
DR EnsemblPlants; AT3G62540.1; AT3G62540.1; AT3G62540.
DR GeneID; 825428; -.
DR Gramene; AT3G62540.1; AT3G62540.1; AT3G62540.
DR KEGG; ath:AT3G62540; -.
DR Araport; AT3G62540; -.
DR TAIR; locus:2096074; AT3G62540.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_20_1; -.
DR InParanoid; Q3EAF8; -.
DR OMA; KMSEESH; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q3EAF8; -.
DR PRO; PR:Q3EAF8; -.
DR Proteomes; UP000006548; Chromosome 3.
DR Genevisible; Q3EAF8; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF17177; PPR_long; 1.
DR TIGRFAMs; TIGR00756; PPR; 9.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..99
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 100..599
FT /note="Pentatricopeptide repeat-containing protein
FT At3g62540, mitochondrial"
FT /id="PRO_0000356153"
FT REPEAT 194..228
FT /note="PPR 1"
FT REPEAT 230..262
FT /note="PPR 2"
FT REPEAT 263..293
FT /note="PPR 3"
FT REPEAT 297..331
FT /note="PPR 4"
FT REPEAT 332..366
FT /note="PPR 5"
FT REPEAT 367..401
FT /note="PPR 6"
FT REPEAT 402..436
FT /note="PPR 7"
FT REPEAT 437..471
FT /note="PPR 8"
FT REPEAT 472..506
FT /note="PPR 9"
FT REPEAT 507..541
FT /note="PPR 10"
SQ SEQUENCE 599 AA; 68507 MW; 008B3C346BB7A5E4 CRC64;
MAAAPWLYLS RRRSSTQTSL RRFLICSSSF DADEFISSQS RVIGGRGEEE VRFSGALFSR
MIHSSTYHPY RQIPLPHSSV QLLDASLGCR GFSSGSSNVS DGCDEEVESE CDNDEETGVS
CVESSTNPEE VERVCKVIDE LFALDRNMEA VLDEMKLDLS HDLIVEVLER FRHARKPAFR
FFCWAAERQG FAHASRTYNS MMSILAKTRQ FETMVSVLEE MGTKGLLTME TFTIAMKAFA
AAKERKKAVG IFELMKKYKF KIGVETINCL LDSLGRAKLG KEAQVLFDKL KERFTPNMMT
YTVLLNGWCR VRNLIEAARI WNDMIDHGLK PDIVAHNVML EGLLRSMKKS DAIKLFHVMK
SKGPCPNVRS YTIMIRDFCK QSSMETAIEY FDDMVDSGLQ PDAAVYTCLI TGFGTQKKLD
TVYELLKEMQ EKGHPPDGKT YNALIKLMAN QKMPEHGTRI YNKMIQNEIE PSIHTFNMIM
KSYFVARNYE MGRAVWDEMI KKGICPDDNS YTVLIRGLIS EGKSREACRY LEEMLDKGMK
TPLIDYNKFA ADFHRGGQPE IFEELAQRAK FSGKFAAAEI FARWAQMTRR RCKQRFMED
