PP295_ARATH
ID PP295_ARATH Reviewed; 573 AA.
AC Q683I9; Q9LZH7;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 11-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 98.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g62890;
GN Name=PCMP-H82; OrderedLocusNames=At3g62890; ORFNames=F26K9_320;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB83139.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL162651; CAB83139.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE80407.1; -; Genomic_DNA.
DR EMBL; AK175128; BAD42891.1; -; mRNA.
DR PIR; T48078; T48078.
DR RefSeq; NP_191848.2; NM_116154.4.
DR AlphaFoldDB; Q683I9; -.
DR SMR; Q683I9; -.
DR STRING; 3702.AT3G62890.1; -.
DR PaxDb; Q683I9; -.
DR PRIDE; Q683I9; -.
DR ProteomicsDB; 249202; -.
DR EnsemblPlants; AT3G62890.1; AT3G62890.1; AT3G62890.
DR GeneID; 825464; -.
DR Gramene; AT3G62890.1; AT3G62890.1; AT3G62890.
DR KEGG; ath:AT3G62890; -.
DR Araport; AT3G62890; -.
DR TAIR; locus:2081635; AT3G62890.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR InParanoid; Q683I9; -.
DR OMA; RPNEFTM; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q683I9; -.
DR PRO; PR:Q683I9; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q683I9; baseline and differential.
DR Genevisible; Q683I9; AT.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..573
FT /note="Pentatricopeptide repeat-containing protein
FT At3g62890"
FT /id="PRO_0000356154"
FT REPEAT 23..60
FT /note="PPR 1"
FT REPEAT 61..95
FT /note="PPR 2"
FT REPEAT 96..126
FT /note="PPR 3"
FT REPEAT 127..161
FT /note="PPR 4"
FT REPEAT 162..188
FT /note="PPR 5"
FT REPEAT 198..232
FT /note="PPR 6"
FT REPEAT 233..263
FT /note="PPR 7"
FT REPEAT 265..295
FT /note="PPR 8"
FT REPEAT 301..336
FT /note="PPR 9"
FT REPEAT 337..367
FT /note="PPR 10"
FT REGION 372..447
FT /note="Type E motif; degenerate"
FT REGION 448..478
FT /note="Type E(+) motif"
FT REGION 479..573
FT /note="Type DYW motif"
SQ SEQUENCE 573 AA; 64946 MW; 2418840A0F80F6E9 CRC64;
MSKGAAIIAY ANPIFHIRHL KLESFLWNII IRAIVHNVSS PQRHSPISVY LRMRNHRVSP
DFHTFPFLLP SFHNPLHLPL GQRTHAQILL FGLDKDPFVR TSLLNMYSSC GDLRSAQRVF
DDSGSKDLPA WNSVVNAYAK AGLIDDARKL FDEMPERNVI SWSCLINGYV MCGKYKEALD
LFREMQLPKP NEAFVRPNEF TMSTVLSACG RLGALEQGKW VHAYIDKYHV EIDIVLGTAL
IDMYAKCGSL ERAKRVFNAL GSKKDVKAYS AMICCLAMYG LTDECFQLFS EMTTSDNINP
NSVTFVGILG ACVHRGLINE GKSYFKMMIE EFGITPSIQH YGCMVDLYGR SGLIKEAESF
IASMPMEPDV LIWGSLLSGS RMLGDIKTCE GALKRLIELD PMNSGAYVLL SNVYAKTGRW
MEVKCIRHEM EVKGINKVPG CSYVEVEGVV HEFVVGDESQ QESERIYAML DEIMQRLREA
GYVTDTKEVL LDLNEKDKEI ALSYHSEKLA IAFCLMKTRP GTPVRIIKNL RICGDCHLVM
KMISKLFSRE IVVRDCNRFH HFRDGSCSCR DFW
