PP298_ARATH
ID PP298_ARATH Reviewed; 466 AA.
AC Q8LDU5; F4JI19; O81330; Q9M133;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 03-AUG-2022, entry version 99.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g01400, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At4g01400; ORFNames=F3D13.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-210.
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC19289.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At4g01395 and At4g01400.; Evidence={ECO:0000305};
CC Sequence=AAM63012.1; Type=Erroneous termination; Note=Truncated C-terminus.; Evidence={ECO:0000305};
CC Sequence=CAB80949.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At4g01395 and At4g01400.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AF069300; AAC19289.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL161491; CAB80949.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002687; AEE82019.2; -; Genomic_DNA.
DR EMBL; AY085796; AAM63012.1; ALT_SEQ; mRNA.
DR PIR; C85018; C85018.
DR PIR; T01377; T01377.
DR RefSeq; NP_001154199.1; NM_001160727.2.
DR AlphaFoldDB; Q8LDU5; -.
DR SMR; Q8LDU5; -.
DR BioGRID; 13234; 8.
DR iPTMnet; Q8LDU5; -.
DR PRIDE; Q8LDU5; -.
DR EnsemblPlants; AT4G01400.1; AT4G01400.1; AT4G01400.
DR GeneID; 28719435; -.
DR Gramene; AT4G01400.1; AT4G01400.1; AT4G01400.
DR KEGG; ath:AT4G01400; -.
DR Araport; AT4G01400; -.
DR TAIR; locus:2125152; AT4G01400.
DR HOGENOM; CLU_021558_1_0_1; -.
DR OMA; IYGEANL; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q8LDU5; -.
DR PRO; PR:Q8LDU5; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q8LDU5; baseline and differential.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0000373; P:Group II intron splicing; IMP:TAIR.
DR GO; GO:0032981; P:mitochondrial respiratory chain complex I assembly; IMP:TAIR.
DR GO; GO:0000963; P:mitochondrial RNA processing; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 8.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..34
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 35..466
FT /note="Pentatricopeptide repeat-containing protein
FT At4g01400, mitochondrial"
FT /id="PRO_0000363416"
FT REPEAT 118..152
FT /note="PPR 1"
FT REPEAT 153..188
FT /note="PPR 2"
FT REPEAT 189..223
FT /note="PPR 3"
FT REPEAT 224..258
FT /note="PPR 4"
FT REPEAT 259..293
FT /note="PPR 5"
FT REPEAT 294..328
FT /note="PPR 6"
FT REPEAT 329..363
FT /note="PPR 7"
FT REPEAT 364..398
FT /note="PPR 8"
SQ SEQUENCE 466 AA; 53250 MW; 2F37FE0541BA4086 CRC64;
MIRRPIYDFA AVFRHLTSPL STSSRFLFYS SSEHEARKPI VSNPKSPIGS PTRVQKLIAS
QSDPLLAKEI FDYASQQPNF RHSRSSHLIL ILKLGRGRYF NLIDDVLAKH RSSGYPLTGE
IFTYLIKVYA EAKLPEKVLS TFYKMLEFNF TPQPKHLNRI LDVLVSHRGY LQKAFELFKS
SRLHGVMPNT RSYNLLMQAF CLNDDLSIAY QLFGKMLERD VVPDVDSYKI LIQGFCRKGQ
VNGAMELLDD MLNKGFVPDR LSYTTLLNSL CRKTQLREAY KLLCRMKLKG CNPDLVHYNT
MILGFCREDR AMDARKVLDD MLSNGCSPNS VSYRTLIGGL CDQGMFDEGK KYLEEMISKG
FSPHFSVSNC LVKGFCSFGK VEEACDVVEV VMKNGETLHS DTWEMVIPLI CNEDESEKIK
LFLEDAVKEE ITGDTRIVDV GIGLGSYLSS KLQMKRKNAR ERRRHL
