PP299_ARATH
ID PP299_ARATH Reviewed; 805 AA.
AC Q8VZE4; O82588; Q9M124;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2002, sequence version 1.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g01570;
GN OrderedLocusNames=At4g01570; ORFNames=F11O4.7, T15B16.21;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC62783.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=CAB77727.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AF096370; AAC62783.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AF104919; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AL161492; CAB77727.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002687; AEE82043.1; -; Genomic_DNA.
DR EMBL; AY065015; AAL57659.1; -; mRNA.
DR EMBL; BT001133; AAN64524.1; -; mRNA.
DR PIR; D85020; D85020.
DR PIR; T01937; T01937.
DR RefSeq; NP_192066.2; NM_116387.2.
DR AlphaFoldDB; Q8VZE4; -.
DR SMR; Q8VZE4; -.
DR STRING; 3702.AT4G01570.1; -.
DR PaxDb; Q8VZE4; -.
DR PRIDE; Q8VZE4; -.
DR ProteomicsDB; 249206; -.
DR EnsemblPlants; AT4G01570.1; AT4G01570.1; AT4G01570.
DR GeneID; 828133; -.
DR Gramene; AT4G01570.1; AT4G01570.1; AT4G01570.
DR KEGG; ath:AT4G01570; -.
DR Araport; AT4G01570; -.
DR TAIR; locus:2133352; AT4G01570.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_8_1; -.
DR InParanoid; Q8VZE4; -.
DR OMA; HMDKLAN; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q8VZE4; -.
DR PRO; PR:Q8VZE4; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q8VZE4; baseline and differential.
DR Genevisible; Q8VZE4; AT.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 4.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 10.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..805
FT /note="Pentatricopeptide repeat-containing protein
FT At4g01570"
FT /id="PRO_0000363417"
FT REPEAT 91..125
FT /note="PPR 1"
FT REPEAT 126..160
FT /note="PPR 2"
FT REPEAT 161..196
FT /note="PPR 3"
FT REPEAT 211..241
FT /note="PPR 4"
FT REPEAT 247..277
FT /note="PPR 5"
FT REPEAT 288..322
FT /note="PPR 6"
FT REPEAT 323..357
FT /note="PPR 7"
FT REPEAT 358..392
FT /note="PPR 8"
FT REPEAT 393..427
FT /note="PPR 9"
FT REPEAT 428..462
FT /note="PPR 10"
FT REPEAT 463..497
FT /note="PPR 11"
FT REPEAT 593..627
FT /note="PPR 12"
FT REPEAT 629..663
FT /note="PPR 13"
FT REPEAT 664..698
FT /note="PPR 14"
FT REPEAT 699..733
FT /note="PPR 15"
FT REPEAT 734..768
FT /note="PPR 16"
SQ SEQUENCE 805 AA; 89934 MW; 5E98E6B41A446786 CRC64;
MRHGRGSAVS AAISGLSPAK NSPFPQLCNV LLVASLSKTL SQSGTRSLDA NSIPISEPVV
LQILRRNSID PSKKLDFFRW CYSLRPGYKH SATAYSQIFR TVCRTGLLGE VPDLLGSMKE
DGVNLDQTMA KILLDSLIRS GKFESALGVL DYMEELGDCL NPSVYDSVLI ALVKKHELRL
ALSILFKLLE ASDNHSDDDT GRVIIVSYLP GTVAVNELLV GLRRADMRSE FKRVFEKLKG
MKRFKFDTWS YNICIHGFGC WGDLDAALSL FKEMKERSSV YGSSFGPDIC TYNSLIHVLC
LFGKAKDALI VWDELKVSGH EPDNSTYRIL IQGCCKSYRM DDAMRIYGEM QYNGFVPDTI
VYNCLLDGTL KARKVTEACQ LFEKMVQEGV RASCWTYNIL IDGLFRNGRA EAGFTLFCDL
KKKGQFVDAI TFSIVGLQLC REGKLEGAVK LVEEMETRGF SVDLVTISSL LIGFHKQGRW
DWKEKLMKHI REGNLVPNVL RWNAGVEASL KRPQSKDKDY TPMFPSKGSF LDIMSMVGSE
DDGASAEEVS PMEDDPWSSS PYMDQLAHQR NQPKPLFGLA RGQRVEAKPD SFDVDMMNTF
LSIYLSKGDL SLACKLFEIF NGMGVTDLTS YTYNSMMSSF VKKGYFQTAR GVLDQMFENF
CAADIATYNV IIQGLGKMGR ADLASAVLDR LTKQGGYLDI VMYNTLINAL GKATRLDEAT
QLFDHMKSNG INPDVVSYNT MIEVNSKAGK LKEAYKYLKA MLDAGCLPNH VTDTILDYLG
KEMEKARFKK ASFVRNKPNN NNISS
