PP303_ARATH
ID PP303_ARATH Reviewed; 729 AA.
AC Q9XE98;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1999, sequence version 1.
DT 03-AUG-2022, entry version 124.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g04370;
GN Name=PCMP-E99; OrderedLocusNames=At4g04370; ORFNames=T19B17.9;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AF069441; AAD36944.1; -; Genomic_DNA.
DR EMBL; AL161500; CAB77905.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE82385.1; -; Genomic_DNA.
DR PIR; C85055; C85055.
DR RefSeq; NP_192346.1; NM_116675.2.
DR AlphaFoldDB; Q9XE98; -.
DR SMR; Q9XE98; -.
DR PaxDb; Q9XE98; -.
DR PRIDE; Q9XE98; -.
DR EnsemblPlants; AT4G04370.1; AT4G04370.1; AT4G04370.
DR GeneID; 825757; -.
DR Gramene; AT4G04370.1; AT4G04370.1; AT4G04370.
DR KEGG; ath:AT4G04370; -.
DR Araport; AT4G04370; -.
DR TAIR; locus:2134842; AT4G04370.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_6_1; -.
DR InParanoid; Q9XE98; -.
DR OMA; NYVQLAH; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9XE98; -.
DR PRO; PR:Q9XE98; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9XE98; baseline and differential.
DR Genevisible; Q9XE98; AT.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 17.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..729
FT /note="Pentatricopeptide repeat-containing protein
FT At4g04370"
FT /id="PRO_0000363421"
FT REPEAT 10..44
FT /note="PPR 1"
FT REPEAT 45..79
FT /note="PPR 2"
FT REPEAT 80..110
FT /note="PPR 3"
FT REPEAT 111..145
FT /note="PPR 4"
FT REPEAT 178..208
FT /note="PPR 5"
FT REPEAT 209..243
FT /note="PPR 6"
FT REPEAT 244..278
FT /note="PPR 7"
FT REPEAT 279..309
FT /note="PPR 8"
FT REPEAT 310..344
FT /note="PPR 9"
FT REPEAT 345..379
FT /note="PPR 10"
FT REPEAT 380..414
FT /note="PPR 11"
FT REPEAT 415..445
FT /note="PPR 12"
FT REPEAT 447..481
FT /note="PPR 13"
FT REPEAT 482..512
FT /note="PPR 14"
FT REPEAT 513..547
FT /note="PPR 15"
FT REPEAT 548..583
FT /note="PPR 16"
FT REPEAT 584..618
FT /note="PPR 17"
FT REGION 619..694
FT /note="Type E motif"
FT REGION 695..723
FT /note="Type E(+) motif"
SQ SEQUENCE 729 AA; 81212 MW; C1D159C8D0160EAA CRC64;
MIRTSSVLNS TKYFNSHINH LSSHGDHKQV LSTFSSMLAN KLLPDTFTFP SLLKACASLQ
RLSFGLSIHQ QVLVNGFSSD FYISSSLVNL YAKFGLLAHA RKVFEEMRER DVVHWTAMIG
CYSRAGIVGE ACSLVNEMRF QGIKPGPVTL LEMLSGVLEI TQLQCLHDFA VIYGFDCDIA
VMNSMLNLYC KCDHVGDAKD LFDQMEQRDM VSWNTMISGY ASVGNMSEIL KLLYRMRGDG
LRPDQQTFGA SLSVSGTMCD LEMGRMLHCQ IVKTGFDVDM HLKTALITMY LKCGKEEASY
RVLETIPNKD VVCWTVMISG LMRLGRAEKA LIVFSEMLQS GSDLSSEAIA SVVASCAQLG
SFDLGASVHG YVLRHGYTLD TPALNSLITM YAKCGHLDKS LVIFERMNER DLVSWNAIIS
GYAQNVDLCK ALLLFEEMKF KTVQQVDSFT VVSLLQACSS AGALPVGKLI HCIVIRSFIR
PCSLVDTALV DMYSKCGYLE AAQRCFDSIS WKDVVSWGIL IAGYGFHGKG DIALEIYSEF
LHSGMEPNHV IFLAVLSSCS HNGMVQQGLK IFSSMVRDFG VEPNHEHLAC VVDLLCRAKR
IEDAFKFYKE NFTRPSIDVL GIILDACRAN GKTEVEDIIC EDMIELKPGD AGHYVKLGHS
FAAMKRWDDV SESWNQMRSL GLKKLPGWSK IEMNGKTTTF FMNHTSHSDD TVSLLKLLSR
EMMQFGSNN
