PP305_ARATH
ID PP305_ARATH Reviewed; 686 AA.
AC Q9SUF9;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g08210;
GN Name=PCMP-E100; OrderedLocusNames=At4g08210; ORFNames=T12G13.50;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL080252; CAB45791.1; -; Genomic_DNA.
DR EMBL; AL161510; CAB81157.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE82609.1; -; Genomic_DNA.
DR PIR; T10548; T10548.
DR RefSeq; NP_192561.1; NM_116890.2.
DR AlphaFoldDB; Q9SUF9; -.
DR SMR; Q9SUF9; -.
DR STRING; 3702.AT4G08210.1; -.
DR PaxDb; Q9SUF9; -.
DR PRIDE; Q9SUF9; -.
DR ProteomicsDB; 249216; -.
DR EnsemblPlants; AT4G08210.1; AT4G08210.1; AT4G08210.
DR GeneID; 826371; -.
DR Gramene; AT4G08210.1; AT4G08210.1; AT4G08210.
DR KEGG; ath:AT4G08210; -.
DR Araport; AT4G08210; -.
DR TAIR; locus:2132452; AT4G08210.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; Q9SUF9; -.
DR OMA; CWTGIIV; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SUF9; -.
DR PRO; PR:Q9SUF9; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9SUF9; baseline and differential.
DR Genevisible; Q9SUF9; AT.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 14.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..686
FT /note="Pentatricopeptide repeat-containing protein
FT At4g08210"
FT /id="PRO_0000363423"
FT REPEAT 4..38
FT /note="PPR 1"
FT REPEAT 39..69
FT /note="PPR 2"
FT REPEAT 70..104
FT /note="PPR 3"
FT REPEAT 106..140
FT /note="PPR 4"
FT REPEAT 141..171
FT /note="PPR 5"
FT REPEAT 172..206
FT /note="PPR 6"
FT REPEAT 207..236
FT /note="PPR 7"
FT REPEAT 237..271
FT /note="PPR 8"
FT REPEAT 272..302
FT /note="PPR 9"
FT REPEAT 306..340
FT /note="PPR 10"
FT REPEAT 341..375
FT /note="PPR 11"
FT REPEAT 376..406
FT /note="PPR 12"
FT REPEAT 407..441
FT /note="PPR 13"
FT REPEAT 442..476
FT /note="PPR 14"
FT REPEAT 477..507
FT /note="PPR 15"
FT REPEAT 508..542
FT /note="PPR 16"
FT REPEAT 543..573
FT /note="PPR 17"
FT REPEAT 579..609
FT /note="PPR 18"
FT REGION 614..686
FT /note="Type E motif; degenerate"
SQ SEQUENCE 686 AA; 75825 MW; 9FD26DBAFCF44EAF CRC64;
MVMDLKLIAA GLRHCGKVQA FKRGESIQAH VIKQGISQNV FIANNVISMY VDFRLLSDAH
KVFDEMSERN IVTWTTMVSG YTSDGKPNKA IELYRRMLDS EEEAANEFMY SAVLKACGLV
GDIQLGILVY ERIGKENLRG DVVLMNSVVD MYVKNGRLIE ANSSFKEILR PSSTSWNTLI
SGYCKAGLMD EAVTLFHRMP QPNVVSWNCL ISGFVDKGSP RALEFLVRMQ REGLVLDGFA
LPCGLKACSF GGLLTMGKQL HCCVVKSGLE SSPFAISALI DMYSNCGSLI YAADVFHQEK
LAVNSSVAVW NSMLSGFLIN EENEAALWLL LQIYQSDLCF DSYTLSGALK ICINYVNLRL
GLQVHSLVVV SGYELDYIVG SILVDLHANV GNIQDAHKLF HRLPNKDIIA FSGLIRGCVK
SGFNSLAFYL FRELIKLGLD ADQFIVSNIL KVCSSLASLG WGKQIHGLCI KKGYESEPVT
ATALVDMYVK CGEIDNGVVL FDGMLERDVV SWTGIIVGFG QNGRVEEAFR YFHKMINIGI
EPNKVTFLGL LSACRHSGLL EEARSTLETM KSEYGLEPYL EHYYCVVDLL GQAGLFQEAN
ELINKMPLEP DKTIWTSLLT ACGTHKNAGL VTVIAEKLLK GFPDDPSVYT SLSNAYATLG
MWDQLSKVRE AAKKLGAKES GMSWII
