PP309_ARATH
ID PP309_ARATH Reviewed; 477 AA.
AC Q5XEY7; O23276;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 03-AUG-2022, entry version 101.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g14170;
GN Name=PCMP-E17; OrderedLocusNames=At4g14170; ORFNames=dl3125c, FCAALL.113;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9461215; DOI=10.1038/35140;
RA Bevan M., Bancroft I., Bent E., Love K., Goodman H.M., Dean C.,
RA Bergkamp R., Dirkse W., van Staveren M., Stiekema W., Drost L., Ridley P.,
RA Hudson S.-A., Patel K., Murphy G., Piffanelli P., Wedler H., Wedler E.,
RA Wambutt R., Weitzenegger T., Pohl T., Terryn N., Gielen J., Villarroel R.,
RA De Clercq R., van Montagu M., Lecharny A., Aubourg S., Gy I., Kreis M.,
RA Lao N., Kavanagh T., Hempel S., Kotter P., Entian K.-D., Rieger M.,
RA Schaefer M., Funk B., Mueller-Auer S., Silvey M., James R., Monfort A.,
RA Pons A., Puigdomenech P., Douka A., Voukelatou E., Milioni D.,
RA Hatzopoulos P., Piravandi E., Obermaier B., Hilbert H., Duesterhoeft A.,
RA Moores T., Jones J.D.G., Eneva T., Palme K., Benes V., Rechmann S.,
RA Ansorge W., Cooke R., Berger C., Delseny M., Voet M., Volckaert G.,
RA Mewes H.-W., Klosterman S., Schueller C., Chalwatzis N.;
RT "Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis
RT thaliana.";
RL Nature 391:485-488(1998).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 6-477.
RC STRAIN=cv. Columbia;
RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 20-477.
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Cheuk R.F., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [7]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAU94392.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=CAB10196.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=CAB78459.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; Z97335; CAB10196.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL161538; CAB78459.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002687; AEE83389.1; -; Genomic_DNA.
DR EMBL; BT015829; AAU94392.1; ALT_INIT; mRNA.
DR EMBL; BT020211; AAV59277.1; -; mRNA.
DR PIR; B71403; B71403.
DR RefSeq; NP_193153.3; NM_117494.4.
DR AlphaFoldDB; Q5XEY7; -.
DR SMR; Q5XEY7; -.
DR STRING; 3702.AT4G14170.1; -.
DR PaxDb; Q5XEY7; -.
DR PRIDE; Q5XEY7; -.
DR EnsemblPlants; AT4G14170.1; AT4G14170.1; AT4G14170.
DR GeneID; 827057; -.
DR Gramene; AT4G14170.1; AT4G14170.1; AT4G14170.
DR KEGG; ath:AT4G14170; -.
DR Araport; AT4G14170; -.
DR TAIR; locus:2129465; AT4G14170.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_2_1; -.
DR InParanoid; Q5XEY7; -.
DR OMA; CYAGLSN; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q5XEY7; -.
DR PRO; PR:Q5XEY7; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q5XEY7; baseline and differential.
DR Genevisible; Q5XEY7; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 1.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 8.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..477
FT /note="Pentatricopeptide repeat-containing protein
FT At4g14170"
FT /id="PRO_0000363427"
FT REPEAT 65..96
FT /note="PPR 1"
FT REPEAT 97..131
FT /note="PPR 2"
FT REPEAT 133..167
FT /note="PPR 3"
FT REPEAT 168..198
FT /note="PPR 4"
FT REPEAT 199..233
FT /note="PPR 5"
FT REPEAT 234..264
FT /note="PPR 6"
FT REPEAT 269..299
FT /note="PPR 7"
FT REPEAT 300..334
FT /note="PPR 8"
FT REPEAT 335..369
FT /note="PPR 9"
FT REPEAT 370..400
FT /note="PPR 10"
FT REGION 405..477
FT /note="Type E motif; degenerate"
SQ SEQUENCE 477 AA; 53253 MW; F7F9ED1C7C11F0B8 CRC64;
MHLPSSSSLY SSPTKSLFAM FLKARALSVT TQNPPDLFSL LHHSPNAKHL RHLHAHLLRT
FLYSNVVLSS KLVLAYSKLN HLFPTSLSVF WHMPYRNIFS WNIIIGEFSR SGFASKSIDL
FLRMWRESCV RPDDFTLPLI LRACSASREA KSGDLIHVLC LKLGFSSSLF VSSALVIMYV
DMGKLLHARK LFDDMPVRDS VLYTAMFGGY VQQGEAMLGL AMFREMGYSG FALDSVVMVS
LLMACGQLGA LKHGKSVHGW CIRRCSCLGL NLGNAITDMY VKCSILDYAH TVFVNMSRRD
VISWSSLILG YGLDGDVVMS FKLFDEMLKE GIEPNAVTFL GVLSACAHGG LVEKSWLYFR
LMQEYNIVPE LKHYASVADC MSRAGLLEEA EKFLEDMPVK PDEAVMGAVL SGCKVYGNVE
VGERVARELI QLKPRKASYY VTLAGLYSAA GRFDEAESLR QWMKEKQISK VPGCSSI
