PP311_ARATH
ID PP311_ARATH Reviewed; 722 AA.
AC O23337;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JAN-1998, sequence version 1.
DT 03-AUG-2022, entry version 132.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g14820;
GN Name=PCMP-H3; OrderedLocusNames=At4g14820; ORFNames=dl3135c, FCAALL.115;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9461215; DOI=10.1038/35140;
RA Bevan M., Bancroft I., Bent E., Love K., Goodman H.M., Dean C.,
RA Bergkamp R., Dirkse W., van Staveren M., Stiekema W., Drost L., Ridley P.,
RA Hudson S.-A., Patel K., Murphy G., Piffanelli P., Wedler H., Wedler E.,
RA Wambutt R., Weitzenegger T., Pohl T., Terryn N., Gielen J., Villarroel R.,
RA De Clercq R., van Montagu M., Lecharny A., Aubourg S., Gy I., Kreis M.,
RA Lao N., Kavanagh T., Hempel S., Kotter P., Entian K.-D., Rieger M.,
RA Schaefer M., Funk B., Mueller-Auer S., Silvey M., James R., Monfort A.,
RA Pons A., Puigdomenech P., Douka A., Voukelatou E., Milioni D.,
RA Hatzopoulos P., Piravandi E., Obermaier B., Hilbert H., Duesterhoeft A.,
RA Moores T., Jones J.D.G., Eneva T., Palme K., Benes V., Rechmann S.,
RA Ansorge W., Cooke R., Berger C., Delseny M., Voet M., Volckaert G.,
RA Mewes H.-W., Klosterman S., Schueller C., Chalwatzis N.;
RT "Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis
RT thaliana.";
RL Nature 391:485-488(1998).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; Z97337; CAB10261.1; -; Genomic_DNA.
DR EMBL; AL161540; CAB78524.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE83506.1; -; Genomic_DNA.
DR PIR; C71411; C71411.
DR RefSeq; NP_193218.1; NM_117568.2.
DR AlphaFoldDB; O23337; -.
DR SMR; O23337; -.
DR PaxDb; O23337; -.
DR PRIDE; O23337; -.
DR ProteomicsDB; 249220; -.
DR EnsemblPlants; AT4G14820.1; AT4G14820.1; AT4G14820.
DR GeneID; 827139; -.
DR Gramene; AT4G14820.1; AT4G14820.1; AT4G14820.
DR KEGG; ath:AT4G14820; -.
DR Araport; AT4G14820; -.
DR TAIR; locus:2130354; AT4G14820.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR InParanoid; O23337; -.
DR OMA; FMMADRY; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; O23337; -.
DR PRO; PR:O23337; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; O23337; baseline and differential.
DR Genevisible; O23337; AT.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 13.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..722
FT /note="Pentatricopeptide repeat-containing protein
FT At4g14820"
FT /id="PRO_0000363429"
FT REPEAT 75..109
FT /note="PPR 1"
FT REPEAT 110..140
FT /note="PPR 2"
FT REPEAT 145..175
FT /note="PPR 3"
FT REPEAT 176..210
FT /note="PPR 4"
FT REPEAT 211..245
FT /note="PPR 5"
FT REPEAT 246..276
FT /note="PPR 6"
FT REPEAT 277..307
FT /note="PPR 7"
FT REPEAT 308..342
FT /note="PPR 8"
FT REPEAT 343..377
FT /note="PPR 9"
FT REPEAT 378..408
FT /note="PPR 10"
FT REPEAT 409..443
FT /note="PPR 11"
FT REPEAT 444..479
FT /note="PPR 12"
FT REPEAT 480..514
FT /note="PPR 13"
FT REGION 515..590
FT /note="Type E motif"
FT REGION 591..621
FT /note="Type E(+) motif"
FT REGION 622..722
FT /note="Type DYW motif"
SQ SEQUENCE 722 AA; 82113 MW; FF52782AD3D9D531 CRC64;
MTLPPPIAST AANTILEKLS FCKSLNHIKQ LHAHILRTVI NHKLNSFLFN LSVSSSSINL
SYALNVFSSI PSPPESIVFN PFLRDLSRSS EPRATILFYQ RIRHVGGRLD QFSFLPILKA
VSKVSALFEG MELHGVAFKI ATLCDPFVET GFMDMYASCG RINYARNVFD EMSHRDVVTW
NTMIERYCRF GLVDEAFKLF EEMKDSNVMP DEMILCNIVS ACGRTGNMRY NRAIYEFLIE
NDVRMDTHLL TALVTMYAGA GCMDMAREFF RKMSVRNLFV STAMVSGYSK CGRLDDAQVI
FDQTEKKDLV CWTTMISAYV ESDYPQEALR VFEEMCCSGI KPDVVSMFSV ISACANLGIL
DKAKWVHSCI HVNGLESELS INNALINMYA KCGGLDATRD VFEKMPRRNV VSWSSMINAL
SMHGEASDAL SLFARMKQEN VEPNEVTFVG VLYGCSHSGL VEEGKKIFAS MTDEYNITPK
LEHYGCMVDL FGRANLLREA LEVIESMPVA SNVVIWGSLM SACRIHGELE LGKFAAKRIL
ELEPDHDGAL VLMSNIYARE QRWEDVRNIR RVMEEKNVFK EKGLSRIDQN GKSHEFLIGD
KRHKQSNEIY AKLDEVVSKL KLAGYVPDCG SVLVDVEEEE KKDLVLWHSE KLALCFGLMN
EEKEEEKDSC GVIRIVKNLR VCEDCHLFFK LVSKVYEREI IVRDRTRFHC YKNGLCSCRD
YW
