PP315_ARATH
ID PP315_ARATH Reviewed; 501 AA.
AC O23491;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 03-AUG-2022, entry version 124.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g16470;
GN Name=PCMP-E12; OrderedLocusNames=At4g16470; ORFNames=dl4260c, FCAALL.374;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9461215; DOI=10.1038/35140;
RA Bevan M., Bancroft I., Bent E., Love K., Goodman H.M., Dean C.,
RA Bergkamp R., Dirkse W., van Staveren M., Stiekema W., Drost L., Ridley P.,
RA Hudson S.-A., Patel K., Murphy G., Piffanelli P., Wedler H., Wedler E.,
RA Wambutt R., Weitzenegger T., Pohl T., Terryn N., Gielen J., Villarroel R.,
RA De Clercq R., van Montagu M., Lecharny A., Aubourg S., Gy I., Kreis M.,
RA Lao N., Kavanagh T., Hempel S., Kotter P., Entian K.-D., Rieger M.,
RA Schaefer M., Funk B., Mueller-Auer S., Silvey M., James R., Monfort A.,
RA Pons A., Puigdomenech P., Douka A., Voukelatou E., Milioni D.,
RA Hatzopoulos P., Piravandi E., Obermaier B., Hilbert H., Duesterhoeft A.,
RA Moores T., Jones J.D.G., Eneva T., Palme K., Benes V., Rechmann S.,
RA Ansorge W., Cooke R., Berger C., Delseny M., Voet M., Volckaert G.,
RA Mewes H.-W., Klosterman S., Schueller C., Chalwatzis N.;
RT "Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis
RT thaliana.";
RL Nature 391:485-488(1998).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB10423.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=CAB78689.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; Z97341; CAB10423.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL161544; CAB78689.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002687; AEE83758.1; -; Genomic_DNA.
DR PIR; E71431; E71431.
DR RefSeq; NP_193380.3; NM_117745.4.
DR AlphaFoldDB; O23491; -.
DR SMR; O23491; -.
DR PaxDb; O23491; -.
DR PRIDE; O23491; -.
DR EnsemblPlants; AT4G16470.1; AT4G16470.1; AT4G16470.
DR GeneID; 827345; -.
DR Gramene; AT4G16470.1; AT4G16470.1; AT4G16470.
DR KEGG; ath:AT4G16470; -.
DR Araport; AT4G16470; -.
DR TAIR; locus:2130679; AT4G16470.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_0_1; -.
DR InParanoid; O23491; -.
DR OMA; KSPCKEH; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; O23491; -.
DR PRO; PR:O23491; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; O23491; baseline and differential.
DR Genevisible; O23491; AT.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 2.
DR PROSITE; PS51375; PPR; 8.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..501
FT /note="Pentatricopeptide repeat-containing protein
FT At4g16470"
FT /id="PRO_0000363433"
FT REPEAT 107..141
FT /note="PPR 1"
FT REPEAT 142..172
FT /note="PPR 2"
FT REPEAT 173..207
FT /note="PPR 3"
FT REPEAT 208..242
FT /note="PPR 4"
FT REPEAT 243..273
FT /note="PPR 5"
FT REPEAT 274..308
FT /note="PPR 6"
FT REPEAT 309..344
FT /note="PPR 7"
FT REPEAT 345..379
FT /note="PPR 8"
FT REGION 380..455
FT /note="Type E motif"
FT REGION 456..486
FT /note="Type E(+) motif"
SQ SEQUENCE 501 AA; 56799 MW; 45B29616D07CC380 CRC64;
MKTLISSSLS HKSQCLTICF KLNKLAMVYY TREFQTEASQ TSASGSMFSG NATTILRRML
AEKRIGRFQV ENQRKTEKLD KTLKGLCVTG RLKEAVGLLW SSGLQVEPET YAVLLQECKQ
RKEYTKGKRI HAQMFVVGFA LNEYLKVKLL ILYALSGDLQ TAGILFRSLK IRDLIPWNAM
ISGYVQKGLE QEGLFIYYDM RQNRIVPDQY TFASVFRACS ALDRLEHGKR AHAVMIKRCI
KSNIIVDSAL VDMYFKCSSF SDGHRVFDQL STRNVITWTS LISGYGYHGK VSEVLKCFEK
MKEEGCRPNP VTFLVVLTAC NHGGLVDKGW EHFYSMKRDY GIEPEGQHYA AMVDTLGRAG
RLQEAYEFVM KSPCKEHPPV WGSLLGACRI HGNVKLLELA ATKFLELDPT NGGNYVVFAN
GYASCGLREA ASKVRRKMEN AGVKKDPGYS QIELQGEVHR FMKDDTSHRL SEKIYKKVHE
MTSFFMDIDY YPDGLDSSCP V
