ID   PP317_ARATH             Reviewed;         674 AA.
AC   B3H672; O23603;
DT   10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT   22-JUL-2008, sequence version 1.
DT   25-MAY-2022, entry version 73.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At4g17616;
GN   OrderedLocusNames=At4g17616; ORFNames=dl4845w, FCAALL;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=9461215; DOI=10.1038/35140;
RA   Bevan M., Bancroft I., Bent E., Love K., Goodman H.M., Dean C.,
RA   Bergkamp R., Dirkse W., van Staveren M., Stiekema W., Drost L., Ridley P.,
RA   Hudson S.-A., Patel K., Murphy G., Piffanelli P., Wedler H., Wedler E.,
RA   Wambutt R., Weitzenegger T., Pohl T., Terryn N., Gielen J., Villarroel R.,
RA   De Clercq R., van Montagu M., Lecharny A., Aubourg S., Gy I., Kreis M.,
RA   Lao N., Kavanagh T., Hempel S., Kotter P., Entian K.-D., Rieger M.,
RA   Schaefer M., Funk B., Mueller-Auer S., Silvey M., James R., Monfort A.,
RA   Pons A., Puigdomenech P., Douka A., Voukelatou E., Milioni D.,
RA   Hatzopoulos P., Piravandi E., Obermaier B., Hilbert H., Duesterhoeft A.,
RA   Moores T., Jones J.D.G., Eneva T., Palme K., Benes V., Rechmann S.,
RA   Ansorge W., Cooke R., Berger C., Delseny M., Voet M., Volckaert G.,
RA   Mewes H.-W., Klosterman S., Schueller C., Chalwatzis N.;
RT   "Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis
RT   thaliana.";
RL   Nature 391:485-488(1998).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10617198; DOI=10.1038/47134;
RA   Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA   Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA   Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA   de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA   Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA   Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA   Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA   Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA   Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA   Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA   Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA   Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA   Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA   Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA   Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA   Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA   Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA   Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA   Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA   Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA   Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA   Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA   Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA   Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA   Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA   Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA   Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA   de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA   Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA   Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA   Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA   Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA   Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA   Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA   Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA   Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA   Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA   O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA   Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA   Martienssen R., McCombie W.R.;
RT   "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL   Nature 402:769-777(1999).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-197.
RC   STRAIN=cv. Columbia;
RX   PubMed=14993207; DOI=10.1101/gr.1515604;
RA   Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA   Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA   Weissenbach J., Salanoubat M.;
RT   "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT   combined approach to evaluate and improve Arabidopsis genome annotation.";
RL   Genome Res. 14:406-413(2004).
RN   [5]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BX841548; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305};
CC       Sequence=CAB10542.1; Type=Erroneous gene model prediction; Note=The predicted gene At4g17620 has been split into 3 genes: At4g17615, At4g17616 and At4g17620.; Evidence={ECO:0000305};
CC       Sequence=CAB78765.1; Type=Erroneous gene model prediction; Note=The predicted gene At4g17620 has been split into 3 genes: At4g17615, At4g17616 and At4g17620.; Evidence={ECO:0000305};
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; Z97343; CAB10542.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AL161546; CAB78765.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; CP002687; AEE83923.1; -; Genomic_DNA.
DR   EMBL; BX841548; -; NOT_ANNOTATED_CDS; mRNA.
DR   RefSeq; NP_001119002.1; NM_001125530.2.
DR   AlphaFoldDB; B3H672; -.
DR   PaxDb; B3H672; -.
DR   PRIDE; B3H672; -.
DR   ProteomicsDB; 248984; -.
DR   EnsemblPlants; AT4G17616.1; AT4G17616.1; AT4G17616.
DR   GeneID; 6240541; -.
DR   Gramene; AT4G17616.1; AT4G17616.1; AT4G17616.
DR   KEGG; ath:AT4G17616; -.
DR   Araport; AT4G17616; -.
DR   TAIR; locus:4515103412; AT4G17616.
DR   eggNOG; ENOG502QTHQ; Eukaryota.
DR   HOGENOM; CLU_008969_0_1_1; -.
DR   InParanoid; B3H672; -.
DR   OMA; MHREIAM; -.
DR   OrthoDB; 338343at2759; -.
DR   PhylomeDB; B3H672; -.
DR   PRO; PR:B3H672; -.
DR   Proteomes; UP000006548; Chromosome 4.
DR   ExpressionAtlas; B3H672; baseline and differential.
DR   Gene3D; 1.25.40.10; -; 3.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF01535; PPR; 2.
DR   PROSITE; PS51375; PPR; 7.
PE   2: Evidence at transcript level;
KW   Reference proteome; Repeat.
FT   CHAIN           1..674
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At4g17616"
FT                   /id="PRO_0000363435"
FT   REPEAT          409..443
FT                   /note="PPR 1"
FT   REPEAT          444..478
FT                   /note="PPR 2"
FT   REPEAT          519..553
FT                   /note="PPR 3"
FT   REPEAT          554..584
FT                   /note="PPR 4"
FT   REPEAT          593..627
FT                   /note="PPR 5"
SQ   SEQUENCE   674 AA;  76498 MW;  743E00CF96D49F80 CRC64;
     MFRKRNLVLE SFRRFDSGNV ETLISWVLCS RTSKPSLFCT SVKPARLNWE VSSQVILKKK
     LETALKDHRV DDAWDVFKDF KRLYGFPESV IMNRFVTVLS YSSDAGWLCK ASDLTRLALK
     QNPGMLSGDV LTKLSLSLAR AQMVESACSI LRIMLEKGYV LTSDVLRLVV MHMVKTEIGT
     CLASNYLVQV CDRFVEFNVG KRNSSPGNVV KPDTVLFNLV LGSCVRFGFS LKGQELIELM
     AKVDVVADAY SIVIMSCIYE MNGMRDELRK FKEHIGQVPP QLLGHYQHFF DNLLSLEFKF
     DDIGSAGRLA LDMCKSKVLV SVENLGFDSE KPRVLPVGSH HIRSGLKIHI SPKLLQRDSS
     LGVDTEATFV NYSNSKLGIT NKTLAKLVYG YKRHDNLPEL SKLLFSLGGS RLCADVIDAC
     VAIGWLEAAH DILDDMNSAG YPMELATYRM VLSGYYKSKM LRNAEVLLKQ MTKAGLITDP
     SNEIVVSPET EEKDSENTEL RDLLVQEINA GKQMKAPSML YELNSSLYYF CKAKMQGDAL
     ITYRKIPKMK IPPTVQSFWI LIDMYSSLGM YREITIVWGD IKRNIASKNL KTTQDLLEKL
     VVNFLRGGYF ERVMELISYM KENDMYNDLT MYKNEYLKLH KNLYRTLKAS DAVTEAQAQR
     LEHVKTFRKL VGIV