PP321_ARATH
ID PP321_ARATH Reviewed; 545 AA.
AC O49399;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 2.
DT 25-MAY-2022, entry version 119.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g18840;
GN Name=PCMP-E101; OrderedLocusNames=At4g18840; ORFNames=F13C5.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL021711; CAA16741.2; -; Genomic_DNA.
DR EMBL; AL161549; CAB78886.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE84097.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM67466.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM67467.1; -; Genomic_DNA.
DR PIR; E85212; E85212.
DR PIR; T05021; T05021.
DR RefSeq; NP_001319988.1; NM_001341304.1.
DR RefSeq; NP_001329295.1; NM_001341305.1.
DR RefSeq; NP_193619.1; NM_118000.1.
DR AlphaFoldDB; O49399; -.
DR SMR; O49399; -.
DR PaxDb; O49399; -.
DR PRIDE; O49399; -.
DR ProteomicsDB; 248987; -.
DR EnsemblPlants; AT4G18840.1; AT4G18840.1; AT4G18840.
DR EnsemblPlants; AT4G18840.2; AT4G18840.2; AT4G18840.
DR EnsemblPlants; AT4G18840.3; AT4G18840.3; AT4G18840.
DR GeneID; 827618; -.
DR Gramene; AT4G18840.1; AT4G18840.1; AT4G18840.
DR Gramene; AT4G18840.2; AT4G18840.2; AT4G18840.
DR Gramene; AT4G18840.3; AT4G18840.3; AT4G18840.
DR KEGG; ath:AT4G18840; -.
DR Araport; AT4G18840; -.
DR TAIR; locus:2117084; AT4G18840.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_6_1; -.
DR InParanoid; O49399; -.
DR OMA; FSEMVYE; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; O49399; -.
DR PRO; PR:O49399; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; O49399; baseline and differential.
DR Genevisible; O49399; AT.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 2.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 12.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..545
FT /note="Pentatricopeptide repeat-containing protein
FT At4g18840"
FT /id="PRO_0000363438"
FT REPEAT 104..138
FT /note="PPR 1"
FT REPEAT 139..173
FT /note="PPR 2"
FT REPEAT 174..204
FT /note="PPR 3"
FT REPEAT 205..239
FT /note="PPR 4"
FT REPEAT 240..266
FT /note="PPR 5"
FT REPEAT 267..301
FT /note="PPR 6"
FT REPEAT 303..337
FT /note="PPR 7"
FT REPEAT 338..368
FT /note="PPR 8"
FT REPEAT 369..403
FT /note="PPR 9"
FT REPEAT 404..434
FT /note="PPR 10"
FT REPEAT 440..474
FT /note="PPR 11"
FT REGION 475..545
FT /note="Type E motif"
SQ SEQUENCE 545 AA; 60842 MW; 1A250EADB456D1D9 CRC64;
MVEKDIYMCA EIIIRPQAYN LRLLQKENLK KMSVCSSTPV PILSFTERAK SLTEIQQAHA
FMLKTGLFHD TFSASKLVAF AATNPEPKTV SYAHSILNRI GSPNGFTHNS VIRAYANSST
PEVALTVFRE MLLGPVFPDK YSFTFVLKAC AAFCGFEEGR QIHGLFIKSG LVTDVFVENT
LVNVYGRSGY FEIARKVLDR MPVRDAVSWN SLLSAYLEKG LVDEARALFD EMEERNVESW
NFMISGYAAA GLVKEAKEVF DSMPVRDVVS WNAMVTAYAH VGCYNEVLEV FNKMLDDSTE
KPDGFTLVSV LSACASLGSL SQGEWVHVYI DKHGIEIEGF LATALVDMYS KCGKIDKALE
VFRATSKRDV STWNSIISDL SVHGLGKDAL EIFSEMVYEG FKPNGITFIG VLSACNHVGM
LDQARKLFEM MSSVYRVEPT IEHYGCMVDL LGRMGKIEEA EELVNEIPAD EASILLESLL
GACKRFGQLE QAERIANRLL ELNLRDSSGY AQMSNLYASD GRWEKVIDGR RNMRAERVNR
SLDVA
