PP325_ARATH
ID PP325_ARATH Reviewed; 838 AA.
AC Q940A6; F4JT70; O65715;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 25-MAY-2022, entry version 111.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g19440, chloroplastic;
DE Flags: Precursor;
GN OrderedLocusNames=At4g19440; ORFNames=T5K18.220;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2-838.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAL07224.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=CAA18631.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=CAB78946.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL022580; CAA18631.1; ALT_INIT; Genomic_DNA.
DR EMBL; AL161550; CAB78946.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002687; AEE84182.2; -; Genomic_DNA.
DR EMBL; CP002687; AEE84183.2; -; Genomic_DNA.
DR EMBL; CP002687; ANM67318.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM67319.1; -; Genomic_DNA.
DR EMBL; AY056145; AAL07224.1; ALT_INIT; mRNA.
DR PIR; T05827; T05827.
DR RefSeq; NP_001190771.2; NM_001203842.2.
DR RefSeq; NP_001329153.1; NM_001341339.1.
DR RefSeq; NP_001329154.1; NM_001341340.1.
DR RefSeq; NP_567587.2; NM_118064.2.
DR AlphaFoldDB; Q940A6; -.
DR SMR; Q940A6; -.
DR STRING; 3702.AT4G19440.1; -.
DR iPTMnet; Q940A6; -.
DR PaxDb; Q940A6; -.
DR PRIDE; Q940A6; -.
DR ProteomicsDB; 249226; -.
DR EnsemblPlants; AT4G19440.1; AT4G19440.1; AT4G19440.
DR EnsemblPlants; AT4G19440.2; AT4G19440.2; AT4G19440.
DR EnsemblPlants; AT4G19440.3; AT4G19440.3; AT4G19440.
DR EnsemblPlants; AT4G19440.4; AT4G19440.4; AT4G19440.
DR GeneID; 827685; -.
DR Gramene; AT4G19440.1; AT4G19440.1; AT4G19440.
DR Gramene; AT4G19440.2; AT4G19440.2; AT4G19440.
DR Gramene; AT4G19440.3; AT4G19440.3; AT4G19440.
DR Gramene; AT4G19440.4; AT4G19440.4; AT4G19440.
DR KEGG; ath:AT4G19440; -.
DR Araport; AT4G19440; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q940A6; -.
DR OMA; HGLCEGK; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q940A6; -.
DR PRO; PR:Q940A6; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q940A6; baseline and differential.
DR Genevisible; Q940A6; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 6.
DR TIGRFAMs; TIGR00756; PPR; 14.
DR PROSITE; PS51375; PPR; 17.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..32
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 33..838
FT /note="Pentatricopeptide repeat-containing protein
FT At4g19440, chloroplastic"
FT /id="PRO_0000363442"
FT REPEAT 238..268
FT /note="PPR 1"
FT REPEAT 272..306
FT /note="PPR 2"
FT REPEAT 307..341
FT /note="PPR 3"
FT REPEAT 342..376
FT /note="PPR 4"
FT REPEAT 377..411
FT /note="PPR 5"
FT REPEAT 412..446
FT /note="PPR 6"
FT REPEAT 447..481
FT /note="PPR 7"
FT REPEAT 482..516
FT /note="PPR 8"
FT REPEAT 517..551
FT /note="PPR 9"
FT REPEAT 552..586
FT /note="PPR 10"
FT REPEAT 587..621
FT /note="PPR 11"
FT REPEAT 622..656
FT /note="PPR 12"
FT REPEAT 657..691
FT /note="PPR 13"
FT REPEAT 692..726
FT /note="PPR 14"
FT REPEAT 727..761
FT /note="PPR 15"
FT REPEAT 762..796
FT /note="PPR 16"
SQ SEQUENCE 838 AA; 94617 MW; 3CACAF96365B5C5D CRC64;
MAALLYFPKI SSQMTSSHFI SFSPMDLRRL SRASYLFTRR LKFIAKSRKC FHTSRYLQQC
VHRPDKSEET SSDRHLHERL SSVLSKRSLD YEQCKQLITV LSPLEFDRLF PEFRSKVNPK
TALDFFRLAS DSFSFSFSLR SYCLLIGLLL DANLLSAARV VLIRLINGNV PVLPCGLRDS
RVAIADAMAS LSLCFDEEIR RKMSDLLIEV YCTQFKRDGC YLALDVFPVL ANKGMFPSKT
TCNILLTSLV RANEFQKCCE AFDVVCKGVS PDVYLFTTAI NAFCKGGKVE EAVKLFSKME
EAGVAPNVVT FNTVIDGLGM CGRYDEAFMF KEKMVERGME PTLITYSILV KGLTRAKRIG
DAYFVLKEMT KKGFPPNVIV YNNLIDSFIE AGSLNKAIEI KDLMVSKGLS LTSSTYNTLI
KGYCKNGQAD NAERLLKEML SIGFNVNQGS FTSVICLLCS HLMFDSALRF VGEMLLRNMS
PGGGLLTTLI SGLCKHGKHS KALELWFQFL NKGFVVDTRT SNALLHGLCE AGKLDEAFRI
QKEILGRGCV MDRVSYNTLI SGCCGKKKLD EAFMFLDEMV KRGLKPDNYT YSILICGLFN
MNKVEEAIQF WDDCKRNGML PDVYTYSVMI DGCCKAERTE EGQEFFDEMM SKNVQPNTVV
YNHLIRAYCR SGRLSMALEL REDMKHKGIS PNSATYTSLI KGMSIISRVE EAKLLFEEMR
MEGLEPNVFH YTALIDGYGK LGQMVKVECL LREMHSKNVH PNKITYTVMI GGYARDGNVT
EASRLLNEMR EKGIVPDSIT YKEFIYGYLK QGGVLEAFKG SDEENYAAII EGWNKLIQ
