PP327_ARATH
ID PP327_ARATH Reviewed; 660 AA.
AC O49436;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-1998, sequence version 1.
DT 03-AUG-2022, entry version 126.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g20090;
DE AltName: Full=Protein EMBRYO DEFECTIVE 1025;
GN Name=EMB1025; OrderedLocusNames=At4g20090; ORFNames=F18F4.190;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND FUNCTION.
RX PubMed=15647901; DOI=10.1007/s00425-004-1452-x;
RA Cushing D.A., Forsthoefel N.R., Gestaut D.R., Vernon D.M.;
RT "Arabidopsis emb175 and other ppr knockout mutants reveal essential roles
RT for pentatricopeptide repeat (PPR) proteins in plant embryogenesis.";
RL Planta 221:424-436(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- FUNCTION: May play a role in embryogenesis.
CC {ECO:0000269|PubMed:15647901}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AY864350; AAW62965.1; -; Genomic_DNA.
DR EMBL; AL021637; CAA16617.1; -; Genomic_DNA.
DR EMBL; AL161552; CAB79009.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE84271.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM67386.1; -; Genomic_DNA.
DR PIR; H85227; H85227.
DR PIR; T04893; T04893.
DR RefSeq; NP_001320003.1; NM_001341399.1.
DR RefSeq; NP_193742.1; NM_118128.2.
DR AlphaFoldDB; O49436; -.
DR SMR; O49436; -.
DR STRING; 3702.AT4G20090.1; -.
DR PaxDb; O49436; -.
DR PRIDE; O49436; -.
DR ProteomicsDB; 249227; -.
DR EnsemblPlants; AT4G20090.1; AT4G20090.1; AT4G20090.
DR EnsemblPlants; AT4G20090.2; AT4G20090.2; AT4G20090.
DR GeneID; 827754; -.
DR Gramene; AT4G20090.1; AT4G20090.1; AT4G20090.
DR Gramene; AT4G20090.2; AT4G20090.2; AT4G20090.
DR KEGG; ath:AT4G20090; -.
DR Araport; AT4G20090; -.
DR TAIR; locus:2119747; AT4G20090.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; O49436; -.
DR OMA; IHGLCED; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; O49436; -.
DR PRO; PR:O49436; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; O49436; baseline and differential.
DR Genevisible; O49436; AT.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 5.
DR TIGRFAMs; TIGR00756; PPR; 12.
DR PROSITE; PS51375; PPR; 15.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..660
FT /note="Pentatricopeptide repeat-containing protein
FT At4g20090"
FT /id="PRO_0000363444"
FT REPEAT 76..110
FT /note="PPR 1"
FT REPEAT 111..141
FT /note="PPR 2"
FT REPEAT 147..181
FT /note="PPR 3"
FT REPEAT 186..220
FT /note="PPR 4"
FT REPEAT 221..255
FT /note="PPR 5"
FT REPEAT 256..290
FT /note="PPR 6"
FT REPEAT 291..325
FT /note="PPR 7"
FT REPEAT 326..360
FT /note="PPR 8"
FT REPEAT 361..395
FT /note="PPR 9"
FT REPEAT 396..430
FT /note="PPR 10"
FT REPEAT 431..465
FT /note="PPR 11"
FT REPEAT 466..500
FT /note="PPR 12"
FT REPEAT 501..535
FT /note="PPR 13"
FT REPEAT 539..573
FT /note="PPR 14"
FT REPEAT 574..609
FT /note="PPR 15"
SQ SEQUENCE 660 AA; 74124 MW; A3AB1CD87206F26B CRC64;
MPKCPIPIRI SFFSYFLKES RILSSNPVNF SIHLRFSSSV SVSPNPSMEV VENPLEAPIS
EKMFKSAPKM GSFKLGDSTL SSMIESYANS GDFDSVEKLL SRIRLENRVI IERSFIVVFR
AYGKAHLPDK AVDLFHRMVD EFRCKRSVKS FNSVLNVIIN EGLYHRGLEF YDYVVNSNMN
MNISPNGLSF NLVIKALCKL RFVDRAIEVF RGMPERKCLP DGYTYCTLMD GLCKEERIDE
AVLLLDEMQS EGCSPSPVIY NVLIDGLCKK GDLTRVTKLV DNMFLKGCVP NEVTYNTLIH
GLCLKGKLDK AVSLLERMVS SKCIPNDVTY GTLINGLVKQ RRATDAVRLL SSMEERGYHL
NQHIYSVLIS GLFKEGKAEE AMSLWRKMAE KGCKPNIVVY SVLVDGLCRE GKPNEAKEIL
NRMIASGCLP NAYTYSSLMK GFFKTGLCEE AVQVWKEMDK TGCSRNKFCY SVLIDGLCGV
GRVKEAMMVW SKMLTIGIKP DTVAYSSIIK GLCGIGSMDA ALKLYHEMLC QEEPKSQPDV
VTYNILLDGL CMQKDISRAV DLLNSMLDRG CDPDVITCNT FLNTLSEKSN SCDKGRSFLE
ELVVRLLKRQ RVSGACTIVE VMLGKYLAPK TSTWAMIVRE ICKPKKINAA IDKCWRNLCT
