PP328_ARATH
ID PP328_ARATH Reviewed; 727 AA.
AC Q9SVH3;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g20740;
GN OrderedLocusNames=At4g20740; ORFNames=F21C20.90;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL080254; CAB45840.1; -; Genomic_DNA.
DR EMBL; AL161553; CAB79074.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE84357.1; -; Genomic_DNA.
DR PIR; T10616; T10616.
DR RefSeq; NP_193806.1; NM_118192.2.
DR AlphaFoldDB; Q9SVH3; -.
DR SMR; Q9SVH3; -.
DR PaxDb; Q9SVH3; -.
DR PRIDE; Q9SVH3; -.
DR ProteomicsDB; 249228; -.
DR EnsemblPlants; AT4G20740.1; AT4G20740.1; AT4G20740.
DR GeneID; 827823; -.
DR Gramene; AT4G20740.1; AT4G20740.1; AT4G20740.
DR KEGG; ath:AT4G20740; -.
DR Araport; AT4G20740; -.
DR TAIR; locus:2121529; AT4G20740.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_47_0_1; -.
DR InParanoid; Q9SVH3; -.
DR OMA; EVHACNR; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SVH3; -.
DR PRO; PR:Q9SVH3; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9SVH3; baseline and differential.
DR Genevisible; Q9SVH3; AT.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 2.
DR Pfam; PF13812; PPR_3; 1.
DR Pfam; PF17177; PPR_long; 1.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 14.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..727
FT /note="Pentatricopeptide repeat-containing protein
FT At4g20740"
FT /id="PRO_0000363445"
FT REPEAT 157..191
FT /note="PPR 1"
FT REPEAT 192..226
FT /note="PPR 2"
FT REPEAT 227..261
FT /note="PPR 3"
FT REPEAT 262..296
FT /note="PPR 4"
FT REPEAT 297..331
FT /note="PPR 5"
FT REPEAT 332..366
FT /note="PPR 6"
FT REPEAT 367..401
FT /note="PPR 7"
FT REPEAT 402..436
FT /note="PPR 8"
FT REPEAT 437..471
FT /note="PPR 9"
FT REPEAT 506..540
FT /note="PPR 10"
FT REPEAT 541..575
FT /note="PPR 11"
FT REPEAT 576..606
FT /note="PPR 12"
FT REPEAT 612..646
FT /note="PPR 13"
FT REPEAT 647..681
FT /note="PPR 14"
FT REGION 1..84
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 31..58
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 727 AA; 82430 MW; 640C1DF60D5DD9FB CRC64;
MKSPKPPNLS DKSLKPNFFH GHRKPSQNRP TVYGGLFSNR QSIPRVSPQP QSNSLAHRTP
FDLRKWDPET HLPPPSPPSH STVISAASER LSPIARFVLD AFRKNRNHWG PSVVSELNKL
RRVTPSIVAE VLKLGNDAAV AAKFFHWAGK QKGYKHDFAA YNAFAYCLNR NGHFRAADQL
PELMDSQGRP PSEKQFEILI RMHADNRRGL RVYYVYEKMK KFGFKPRVFL YNRIMDALVK
NGYFDLALAV YEDFKEDGLV EESTTFMILV KGLCKAGRIE EMLEILQRMR ENLCKPDVFA
YTAMIKTLVS EGNLDASLRV WDEMRRDEIK PDVMAYGTLV VGLCKDGRVE RGYELFMEMK
GKQILIDREI YRVLIEGFVA DGKVRSACNL WEDLVDSGYI ADIGIYNAVI KGLCSVNQVD
KAYKLFQVAI EEELEPDFET LSPIMVAYVV MNRLSDFSNV LERIGELGYP VSDYLTQFFK
LLCADEEKNA MALDVFYILK TKGHGSVSVY NILMEALYKM GDIQKSLSLF YEMRKLGFEP
DSSSYSIAIC CFVEKGDVKA ACSFHEKIIE MSCVPSIAAY LSLTKGLCQI GEIDAVMLLV
RECLGNVESG PMEFKYALTV CHVCKGSNAE KVMKVVDEMN QEGVFINEVI YCAIISGMSK
HGTIKVAREV FTELKKRKVM TEADMVVYEE MLIEQTKKKT ADLVLSGIKF FGLESKLRAK
GCRLLDN
