PP329_ARATH
ID PP329_ARATH Reviewed; 774 AA.
AC Q9SVH0;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 25-MAY-2022, entry version 117.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g20770;
GN Name=PCMP-E35; OrderedLocusNames=At4g20770; ORFNames=F21C20.120;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB45843.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=CAB79077.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL080254; CAB45843.1; ALT_INIT; Genomic_DNA.
DR EMBL; AL161553; CAB79077.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002687; AEE84359.1; -; Genomic_DNA.
DR PIR; T10619; T10619.
DR RefSeq; NP_193809.2; NM_118195.2.
DR AlphaFoldDB; Q9SVH0; -.
DR SMR; Q9SVH0; -.
DR PaxDb; Q9SVH0; -.
DR PRIDE; Q9SVH0; -.
DR ProteomicsDB; 249229; -.
DR EnsemblPlants; AT4G20770.1; AT4G20770.1; AT4G20770.
DR GeneID; 827825; -.
DR Gramene; AT4G20770.1; AT4G20770.1; AT4G20770.
DR KEGG; ath:AT4G20770; -.
DR Araport; AT4G20770; -.
DR TAIR; locus:2121479; AT4G20770.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_10_1; -.
DR InParanoid; Q9SVH0; -.
DR OMA; RRCHGVA; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SVH0; -.
DR PRO; PR:Q9SVH0; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9SVH0; baseline and differential.
DR Genevisible; Q9SVH0; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 4.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 5.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 17.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..774
FT /note="Pentatricopeptide repeat-containing protein
FT At4g20770"
FT /id="PRO_0000363446"
FT REPEAT 5..39
FT /note="PPR 1"
FT REPEAT 40..70
FT /note="PPR 2"
FT REPEAT 71..101
FT /note="PPR 3"
FT REPEAT 102..136
FT /note="PPR 4"
FT REPEAT 137..171
FT /note="PPR 5"
FT REPEAT 172..203
FT /note="PPR 6"
FT REPEAT 204..238
FT /note="PPR 7"
FT REPEAT 239..270
FT /note="PPR 8"
FT REPEAT 283..313
FT /note="PPR 9"
FT REPEAT 314..348
FT /note="PPR 10"
FT REPEAT 349..379
FT /note="PPR 11"
FT REPEAT 380..414
FT /note="PPR 12"
FT REPEAT 415..449
FT /note="PPR 13"
FT REPEAT 450..480
FT /note="PPR 14"
FT REPEAT 482..516
FT /note="PPR 15"
FT REPEAT 518..552
FT /note="PPR 16"
FT REPEAT 553..583
FT /note="PPR 17"
FT REPEAT 584..618
FT /note="PPR 18"
FT REPEAT 619..654
FT /note="PPR 19"
FT REPEAT 655..685
FT /note="PPR 20"
FT REGION 690..765
FT /note="Type E motif"
SQ SEQUENCE 774 AA; 86377 MW; A7B79A3173D8A144 CRC64;
MRSGGNKYLA SLLRCYRDER CKLSGKVIHG FIVRMGMKSD TYLCNRLLDL YIECGDGDYA
RKVFDEMSVR DVYSWNAFLT FRCKVGDLGE ACEVFDGMPE RDVVSWNNMI SVLVRKGFEE
KALVVYKRMV CDGFLPSRFT LASVLSACSK VLDGVFGMRC HGVAVKTGLD KNIFVGNALL
SMYAKCGFIV DYGVRVFESL SQPNEVSYTA VIGGLARENK VLEAVQMFRL MCEKGVQVDS
VCLSNILSIS APREGCDSLS EIYGNELGKQ IHCLALRLGF GGDLHLNNSL LEIYAKNKDM
NGAELIFAEM PEVNVVSWNI MIVGFGQEYR SDKSVEFLTR MRDSGFQPNE VTCISVLGAC
FRSGDVETGR RIFSSIPQPS VSAWNAMLSG YSNYEHYEEA ISNFRQMQFQ NLKPDKTTLS
VILSSCARLR FLEGGKQIHG VVIRTEISKN SHIVSGLIAV YSECEKMEIS ECIFDDCINE
LDIACWNSMI SGFRHNMLDT KALILFRRMH QTAVLCPNET SFATVLSSCS RLCSLLHGRQ
FHGLVVKSGY VSDSFVETAL TDMYCKCGEI DSARQFFDAV LRKNTVIWNE MIHGYGHNGR
GDEAVGLYRK MISSGEKPDG ITFVSVLTAC SHSGLVETGL EILSSMQRIH GIEPELDHYI
CIVDCLGRAG RLEDAEKLAE ATPYKSSSVL WEILLSSCRV HGDVSLARRV AEKLMRLDPQ
SSAAYVLLSN TYSSLRQWDD SAALQGLMNK NRVHKTPGQS WTTYGNDLDS GFRK
