PP332_ARATH
ID PP332_ARATH Reviewed; 307 AA.
AC Q8LG95; O49560;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2002, sequence version 1.
DT 03-AUG-2022, entry version 93.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g21190;
DE AltName: Full=Protein EMBRYO DEFECTIVE 1417;
GN Name=EMB1417; OrderedLocusNames=At4g21190; ORFNames=F7J7.130;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAA17538.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=CAB79119.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AL021960; CAA17538.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL161554; CAB79119.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002687; AEE84417.1; -; Genomic_DNA.
DR EMBL; AK175548; BAD43311.1; -; mRNA.
DR EMBL; AK176577; BAD44340.1; -; mRNA.
DR EMBL; AK176584; BAD44347.1; -; mRNA.
DR EMBL; AY084397; AAM67280.1; -; mRNA.
DR PIR; T04950; T04950.
DR RefSeq; NP_567622.1; NM_118238.4.
DR AlphaFoldDB; Q8LG95; -.
DR SMR; Q8LG95; -.
DR BioGRID; 13158; 1.
DR STRING; 3702.AT4G21190.1; -.
DR PaxDb; Q8LG95; -.
DR PRIDE; Q8LG95; -.
DR ProteomicsDB; 249232; -.
DR EnsemblPlants; AT4G21190.1; AT4G21190.1; AT4G21190.
DR GeneID; 827867; -.
DR Gramene; AT4G21190.1; AT4G21190.1; AT4G21190.
DR KEGG; ath:AT4G21190; -.
DR Araport; AT4G21190; -.
DR TAIR; locus:2127388; AT4G21190.
DR eggNOG; ENOG502QXIB; Eukaryota.
DR HOGENOM; CLU_049554_2_0_1; -.
DR InParanoid; Q8LG95; -.
DR OMA; WEYRHIK; -.
DR OrthoDB; 943776at2759; -.
DR PhylomeDB; Q8LG95; -.
DR PRO; PR:Q8LG95; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q8LG95; baseline and differential.
DR Genevisible; Q8LG95; AT.
DR Gene3D; 1.25.40.10; -; 1.
DR InterPro; IPR044646; EMB1417-like.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR46782; PTHR46782; 1.
DR Pfam; PF01535; PPR; 2.
DR TIGRFAMs; TIGR00756; PPR; 1.
DR PROSITE; PS51375; PPR; 2.
PE 2: Evidence at transcript level;
KW Coiled coil; Reference proteome; Repeat.
FT CHAIN 1..307
FT /note="Pentatricopeptide repeat-containing protein
FT At4g21190"
FT /id="PRO_0000363449"
FT REPEAT 125..159
FT /note="PPR 1"
FT REPEAT 161..195
FT /note="PPR 2"
FT REGION 248..307
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 238..292
FT /evidence="ECO:0000255"
FT COMPBIAS 262..285
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 307 AA; 35481 MW; 98921EA7A22BB014 CRC64;
MLSLRYSLPY LLLQTRESST KLFTKKPNNV VVCAARGPRP RSPRVWKTRK RIGTISKAAK
MIACIKGLSN VKEEVYGALD SFIAWELEFP LVIVKKALVI LEDEKEWKKI IQVTKWMLSK
GQGRTMGTYF SLLNALAEDN RLDEAEELWN KLFMEHLEGT PRKFFNKMIS IYYKRDMHQK
LFEVFADMEE LGVKPNVAIV SMVGKVFVKL EMKDKYEKLM KKYPPPQWEF RYIKGRRVKV
KAKQLNELSE GEGGLSSDED KIDNEIESEE EDGEDLSEEE EDEKELLGGS QGQITSREPS
LDHLDSS
