PP333_ARATH
ID PP333_ARATH Reviewed; 857 AA.
AC Q9STE1; O49569;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 118.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g21300;
GN Name=PCMP-E36; OrderedLocusNames=At4g21300; ORFNames=T6K22.30;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL021960; CAA17548.1; -; Genomic_DNA.
DR EMBL; AL031187; CAA20195.1; -; Genomic_DNA.
DR EMBL; AL161554; CAB79129.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE84437.1; -; Genomic_DNA.
DR PIR; T05172; T05172.
DR RefSeq; NP_193861.1; NM_118248.2.
DR AlphaFoldDB; Q9STE1; -.
DR SMR; Q9STE1; -.
DR STRING; 3702.AT4G21300.1; -.
DR PaxDb; Q9STE1; -.
DR PRIDE; Q9STE1; -.
DR ProteomicsDB; 249233; -.
DR EnsemblPlants; AT4G21300.1; AT4G21300.1; AT4G21300.
DR GeneID; 827878; -.
DR Gramene; AT4G21300.1; AT4G21300.1; AT4G21300.
DR KEGG; ath:AT4G21300; -.
DR Araport; AT4G21300; -.
DR TAIR; locus:2141171; AT4G21300.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_6_1; -.
DR InParanoid; Q9STE1; -.
DR OMA; RHMQEEG; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9STE1; -.
DR PRO; PR:Q9STE1; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9STE1; baseline and differential.
DR Genevisible; Q9STE1; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 4.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 16.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..857
FT /note="Pentatricopeptide repeat-containing protein
FT At4g21300"
FT /id="PRO_0000363450"
FT REPEAT 102..136
FT /note="PPR 1"
FT REPEAT 137..171
FT /note="PPR 2"
FT REPEAT 172..202
FT /note="PPR 3"
FT REPEAT 203..237
FT /note="PPR 4"
FT REPEAT 238..272
FT /note="PPR 5"
FT REPEAT 273..303
FT /note="PPR 6"
FT REPEAT 304..338
FT /note="PPR 7"
FT REPEAT 339..373
FT /note="PPR 8"
FT REPEAT 374..404
FT /note="PPR 9"
FT REPEAT 405..439
FT /note="PPR 10"
FT REPEAT 440..474
FT /note="PPR 11"
FT REPEAT 475..505
FT /note="PPR 12"
FT REPEAT 506..540
FT /note="PPR 13"
FT REPEAT 541..575
FT /note="PPR 14"
FT REPEAT 576..606
FT /note="PPR 15"
FT REPEAT 607..642
FT /note="PPR 16"
FT REPEAT 643..678
FT /note="PPR 17"
FT REPEAT 679..709
FT /note="PPR 18"
FT REGION 714..789
FT /note="Type E motif"
FT REGION 790..820
FT /note="Type E(+) motif"
SQ SEQUENCE 857 AA; 95741 MW; 60F6F22A7641CBC3 CRC64;
MSISSVAKRF APAIAPYKKS LPLRNSSRFL EETIPRRLSL LLQACSNPNL LRQGKQVHAF
LIVNSISGDS YTDERILGMY AMCGSFSDCG KMFYRLDLRR SSIRPWNSII SSFVRNGLLN
QALAFYFKML CFGVSPDVST FPCLVKACVA LKNFKGIDFL SDTVSSLGMD CNEFVASSLI
KAYLEYGKID VPSKLFDRVL QKDCVIWNVM LNGYAKCGAL DSVIKGFSVM RMDQISPNAV
TFDCVLSVCA SKLLIDLGVQ LHGLVVVSGV DFEGSIKNSL LSMYSKCGRF DDASKLFRMM
SRADTVTWNC MISGYVQSGL MEESLTFFYE MISSGVLPDA ITFSSLLPSV SKFENLEYCK
QIHCYIMRHS ISLDIFLTSA LIDAYFKCRG VSMAQNIFSQ CNSVDVVVFT AMISGYLHNG
LYIDSLEMFR WLVKVKISPN EITLVSILPV IGILLALKLG RELHGFIIKK GFDNRCNIGC
AVIDMYAKCG RMNLAYEIFE RLSKRDIVSW NSMITRCAQS DNPSAAIDIF RQMGVSGICY
DCVSISAALS ACANLPSESF GKAIHGFMIK HSLASDVYSE STLIDMYAKC GNLKAAMNVF
KTMKEKNIVS WNSIIAACGN HGKLKDSLCL FHEMVEKSGI RPDQITFLEI ISSCCHVGDV
DEGVRFFRSM TEDYGIQPQQ EHYACVVDLF GRAGRLTEAY ETVKSMPFPP DAGVWGTLLG
ACRLHKNVEL AEVASSKLMD LDPSNSGYYV LISNAHANAR EWESVTKVRS LMKEREVQKI
PGYSWIEINK RTHLFVSGDV NHPESSHIYS LLNSLLGELR LEGYIPQPYL PLHPESSRKV
YPVSRFIEKE MRDPDKV
