PP337_ARATH
ID PP337_ARATH Reviewed; 527 AA.
AC Q9SB36;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 126.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g25270, chloroplastic;
DE Flags: Precursor;
GN Name=PCMP-E53; OrderedLocusNames=At4g25270; ORFNames=F24A6.110;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL035396; CAA23068.1; -; Genomic_DNA.
DR EMBL; AL161563; CAB81338.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE85033.1; -; Genomic_DNA.
DR PIR; T05548; T05548.
DR RefSeq; NP_194257.1; NM_118659.2.
DR AlphaFoldDB; Q9SB36; -.
DR SMR; Q9SB36; -.
DR STRING; 3702.AT4G25270.1; -.
DR PaxDb; Q9SB36; -.
DR PRIDE; Q9SB36; -.
DR ProteomicsDB; 249237; -.
DR EnsemblPlants; AT4G25270.1; AT4G25270.1; AT4G25270.
DR GeneID; 828630; -.
DR Gramene; AT4G25270.1; AT4G25270.1; AT4G25270.
DR KEGG; ath:AT4G25270; -.
DR Araport; AT4G25270; -.
DR TAIR; locus:2122634; AT4G25270.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_1_1; -.
DR InParanoid; Q9SB36; -.
DR OMA; VEWNLSI; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SB36; -.
DR PRO; PR:Q9SB36; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9SB36; baseline and differential.
DR Genevisible; Q9SB36; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0008380; P:RNA splicing; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 2.
DR Pfam; PF13812; PPR_3; 1.
DR SUPFAM; SSF48452; SSF48452; 2.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 9.
PE 3: Inferred from homology;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..47
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 48..527
FT /note="Pentatricopeptide repeat-containing protein
FT At4g25270, chloroplastic"
FT /id="PRO_0000363454"
FT REPEAT 126..156
FT /note="PPR 1"
FT REPEAT 159..193
FT /note="PPR 2"
FT REPEAT 194..228
FT /note="PPR 3"
FT REPEAT 229..259
FT /note="PPR 4"
FT REPEAT 260..294
FT /note="PPR 5"
FT REPEAT 295..326
FT /note="PPR 6"
FT REPEAT 327..361
FT /note="PPR 7"
FT REPEAT 367..389
FT /note="PPR 8"
FT REPEAT 390..425
FT /note="PPR 9"
FT REPEAT 426..457
FT /note="PPR 10"
FT REGION 12..44
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 462..527
FT /note="Type E motif; degenerate"
SQ SEQUENCE 527 AA; 59535 MW; EDF79DD762DEEC0B CRC64;
MVSIVVHKPS FSYPSVSSSS MKKKPRHHQQ LKQHRQNQYN NNGFTSLSFT KPSPTPLLIE
KQSIHRTQLE ALDSVITDLE TSAQKGISLT EPEIFASLLE TCYSLRAIDH GVRVHHLIPP
YLLRNNLGIS SKLVRLYASC GYAEVAHEVF DRMSKRDSSP FAWNSLISGY AELGQYEDAM
ALYFQMAEDG VKPDRFTFPR VLKACGGIGS VQIGEAIHRD LVKEGFGYDV YVLNALVVMY
AKCGDIVKAR NVFDMIPHKD YVSWNSMLTG YLHHGLLHEA LDIFRLMVQN GIEPDKVAIS
SVLARVLSFK HGRQLHGWVI RRGMEWELSV ANALIVLYSK RGQLGQACFI FDQMLERDTV
SWNAIISAHS KNSNGLKYFE QMHRANAKPD GITFVSVLSL CANTGMVEDG ERLFSLMSKE
YGIDPKMEHY ACMVNLYGRA GMMEEAYSMI VQEMGLEAGP TVWGALLYAC YLHGNTDIGE
VAAQRLFELE PDNEHNFELL IRIYSKAKRA EDVERVRQMM VDRGLET
