PP338_ARATH
ID PP338_ARATH Reviewed; 521 AA.
AC Q9SZ10;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g26680, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At4g26680; ORFNames=F10M23.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL035440; CAB36514.1; -; Genomic_DNA.
DR EMBL; AL161565; CAB79523.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE85236.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE85237.1; -; Genomic_DNA.
DR PIR; T04791; T04791.
DR RefSeq; NP_001190849.1; NM_001203920.1.
DR RefSeq; NP_194398.1; NM_118802.2.
DR AlphaFoldDB; Q9SZ10; -.
DR SMR; Q9SZ10; -.
DR PaxDb; Q9SZ10; -.
DR PRIDE; Q9SZ10; -.
DR ProteomicsDB; 249238; -.
DR EnsemblPlants; AT4G26680.1; AT4G26680.1; AT4G26680.
DR EnsemblPlants; AT4G26680.2; AT4G26680.2; AT4G26680.
DR GeneID; 828775; -.
DR Gramene; AT4G26680.1; AT4G26680.1; AT4G26680.
DR Gramene; AT4G26680.2; AT4G26680.2; AT4G26680.
DR KEGG; ath:AT4G26680; -.
DR Araport; AT4G26680; -.
DR TAIR; locus:2116372; AT4G26680.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9SZ10; -.
DR OMA; QCVRNNS; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SZ10; -.
DR PRO; PR:Q9SZ10; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9SZ10; baseline and differential.
DR Genevisible; Q9SZ10; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 11.
PE 3: Inferred from homology;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..38
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 39..521
FT /note="Pentatricopeptide repeat-containing protein
FT At4g26680, mitochondrial"
FT /id="PRO_0000363455"
FT REPEAT 167..201
FT /note="PPR 1"
FT REPEAT 202..236
FT /note="PPR 2"
FT REPEAT 237..271
FT /note="PPR 3"
FT REPEAT 272..306
FT /note="PPR 4"
FT REPEAT 307..341
FT /note="PPR 5"
FT REPEAT 342..376
FT /note="PPR 6"
FT REPEAT 377..411
FT /note="PPR 7"
FT REPEAT 412..446
FT /note="PPR 8"
FT REPEAT 447..481
FT /note="PPR 9"
FT REPEAT 482..516
FT /note="PPR 10"
SQ SEQUENCE 521 AA; 59364 MW; A9709863DF5C2AF1 CRC64;
MIRISIGVNR RLRYQFSSFA GYSGSENPRL FKTLGAANTP IPHRRNPEPK GQDLDFVNVA
HSHLIQSDWD KLNKLSDHLD SFRVKNVLLK IQKDYLLSLE FFNWAKTRNP GSHSLETHAI
VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH
LKKFRNATDT FMQMKDYGFL PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT
LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE
MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF VKELDKENLV PNSSTFSALI
MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP
LDSRTVHQVC NGLKHQGKDQ LVKKLLQEME GKKFLQESFN N
