PP340_ARATH
ID PP340_ARATH Reviewed; 704 AA.
AC Q9SUD8; Q8L7T0;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 119.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g28010;
GN OrderedLocusNames=At4g28010; ORFNames=T13J8.120;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL035524; CAB36770.1; -; Genomic_DNA.
DR EMBL; AL161572; CAB79603.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE85420.1; -; Genomic_DNA.
DR EMBL; AY128275; AAM91084.1; -; mRNA.
DR PIR; T02902; T02902.
DR RefSeq; NP_194530.1; NM_118939.3.
DR AlphaFoldDB; Q9SUD8; -.
DR SMR; Q9SUD8; -.
DR STRING; 3702.AT4G28010.1; -.
DR PaxDb; Q9SUD8; -.
DR PRIDE; Q9SUD8; -.
DR ProteomicsDB; 248991; -.
DR EnsemblPlants; AT4G28010.1; AT4G28010.1; AT4G28010.
DR GeneID; 828915; -.
DR Gramene; AT4G28010.1; AT4G28010.1; AT4G28010.
DR KEGG; ath:AT4G28010; -.
DR Araport; AT4G28010; -.
DR TAIR; locus:2132937; AT4G28010.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9SUD8; -.
DR OMA; YTYLINI; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SUD8; -.
DR PRO; PR:Q9SUD8; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9SUD8; baseline and differential.
DR Genevisible; Q9SUD8; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:GOC.
DR GO; GO:0090617; P:mitochondrial mRNA 5'-end processing; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 7.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 3.
DR Pfam; PF13041; PPR_2; 5.
DR TIGRFAMs; TIGR00756; PPR; 14.
DR PROSITE; PS51375; PPR; 17.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..704
FT /note="Pentatricopeptide repeat-containing protein
FT At4g28010"
FT /id="PRO_0000363457"
FT REPEAT 71..105
FT /note="PPR 1"
FT REPEAT 106..140
FT /note="PPR 2"
FT REPEAT 141..175
FT /note="PPR 3"
FT REPEAT 176..210
FT /note="PPR 4"
FT REPEAT 211..245
FT /note="PPR 5"
FT REPEAT 246..280
FT /note="PPR 6"
FT REPEAT 281..315
FT /note="PPR 7"
FT REPEAT 316..350
FT /note="PPR 8"
FT REPEAT 351..385
FT /note="PPR 9"
FT REPEAT 386..416
FT /note="PPR 10"
FT REPEAT 423..453
FT /note="PPR 11"
FT REPEAT 458..492
FT /note="PPR 12"
FT REPEAT 493..527
FT /note="PPR 13"
FT REPEAT 528..562
FT /note="PPR 14"
FT REPEAT 563..597
FT /note="PPR 15"
FT REPEAT 598..632
FT /note="PPR 16"
FT REPEAT 633..667
FT /note="PPR 17"
FT CONFLICT 76
FT /note="N -> S (in Ref. 3; AAM91084)"
FT /evidence="ECO:0000305"
FT CONFLICT 339
FT /note="L -> P (in Ref. 3; AAM91084)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 704 AA; 79110 MW; 9B5A7DB47647204E CRC64;
MRFWTSAAAA EILRRDEHVV RKLLNPRVYS KLVNAFSETE TKLRSLCEDS NPQLKNAVSV
FQQAVDSGSS LAFAGNNLMA KLVRSRNHEL AFSFYRKMLE TDTFINFVSL SGLLECYVQM
RKTGFAFGVL ALMLKRGFAF NVYNHNILLK GLCRNLECGK AVSLLREMRR NSLMPDVFSY
NTVIRGFCEG KELEKALELA NEMKGSGCSW SLVTWGILID AFCKAGKMDE AMGFLKEMKF
MGLEADLVVY TSLIRGFCDC GELDRGKALF DEVLERGDSP CAITYNTLIR GFCKLGQLKE
ASEIFEFMIE RGVRPNVYTY TGLIDGLCGV GKTKEALQLL NLMIEKDEEP NAVTYNIIIN
KLCKDGLVAD AVEIVELMKK RRTRPDNITY NILLGGLCAK GDLDEASKLL YLMLKDSSYT
DPDVISYNAL IHGLCKENRL HQALDIYDLL VEKLGAGDRV TTNILLNSTL KAGDVNKAME
LWKQISDSKI VRNSDTYTAM IDGFCKTGML NVAKGLLCKM RVSELQPSVF DYNCLLSSLC
KEGSLDQAWR LFEEMQRDNN FPDVVSFNIM IDGSLKAGDI KSAESLLVGM SRAGLSPDLF
TYSKLINRFL KLGYLDEAIS FFDKMVDSGF EPDAHICDSV LKYCISQGET DKLTELVKKL
VDKDIVLDKE LTCTVMDYMC NSSANMDLAK RLLRVTDDKE ERDK
