PP341_ARATH
ID PP341_ARATH Reviewed; 792 AA.
AC Q9SUH6; Q9M4P4;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 122.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g30700;
DE AltName: Full=Protein DYW9;
GN Name=DYW9; Synonyms=PCMP-H9; OrderedLocusNames=At4g30700;
GN ORFNames=T10C21.50;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 668-792, AND GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BX828159; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL109787; CAB52443.1; -; Genomic_DNA.
DR EMBL; AL161577; CAB79788.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE85798.1; -; Genomic_DNA.
DR EMBL; BX828159; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AJ006042; CAA06831.1; -; mRNA.
DR PIR; C85359; C85359.
DR PIR; T52645; T52645.
DR RefSeq; NP_194799.1; NM_119216.5.
DR AlphaFoldDB; Q9SUH6; -.
DR SMR; Q9SUH6; -.
DR STRING; 3702.AT4G30700.1; -.
DR iPTMnet; Q9SUH6; -.
DR PaxDb; Q9SUH6; -.
DR PRIDE; Q9SUH6; -.
DR ProteomicsDB; 248992; -.
DR EnsemblPlants; AT4G30700.1; AT4G30700.1; AT4G30700.
DR GeneID; 829193; -.
DR Gramene; AT4G30700.1; AT4G30700.1; AT4G30700.
DR KEGG; ath:AT4G30700; -.
DR Araport; AT4G30700; -.
DR TAIR; locus:2131939; AT4G30700.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; Q9SUH6; -.
DR OMA; HTSKKQY; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SUH6; -.
DR PRO; PR:Q9SUH6; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9SUH6; baseline and differential.
DR Genevisible; Q9SUH6; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0016554; P:cytidine to uridine editing; IMP:TAIR.
DR GO; GO:0080156; P:mitochondrial mRNA modification; IMP:TAIR.
DR GO; GO:0000963; P:mitochondrial RNA processing; IMP:TAIR.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..792
FT /note="Pentatricopeptide repeat-containing protein
FT At4g30700"
FT /id="PRO_0000363458"
FT REPEAT 51..81
FT /note="PPR 1"
FT REPEAT 82..117
FT /note="PPR 2"
FT REPEAT 118..152
FT /note="PPR 3"
FT REPEAT 153..183
FT /note="PPR 4"
FT REPEAT 184..218
FT /note="PPR 5"
FT REPEAT 220..254
FT /note="PPR 6"
FT REPEAT 255..285
FT /note="PPR 7"
FT REPEAT 286..320
FT /note="PPR 8"
FT REPEAT 321..352
FT /note="PPR 9"
FT REPEAT 353..383
FT /note="PPR 10"
FT REPEAT 384..418
FT /note="PPR 11"
FT REPEAT 419..453
FT /note="PPR 12"
FT REPEAT 454..484
FT /note="PPR 13"
FT REPEAT 485..519
FT /note="PPR 14"
FT REPEAT 520..555
FT /note="PPR 15"
FT REPEAT 556..586
FT /note="PPR 16"
FT REGION 591..666
FT /note="Type E motif"
FT REGION 667..697
FT /note="Type E(+) motif"
FT REGION 698..792
FT /note="Type DYW motif"
SQ SEQUENCE 792 AA; 88777 MW; 02A3A882A5B17290 CRC64;
MLLRTVSSAT AETTAALISK NTYLDFFKRS TSISHLAQTH AQIILHGFRN DISLLTKLTQ
RLSDLGAIYY ARDIFLSVQR PDVFLFNVLM RGFSVNESPH SSLSVFAHLR KSTDLKPNSS
TYAFAISAAS GFRDDRAGRV IHGQAVVDGC DSELLLGSNI VKMYFKFWRV EDARKVFDRM
PEKDTILWNT MISGYRKNEM YVESIQVFRD LINESCTRLD TTTLLDILPA VAELQELRLG
MQIHSLATKT GCYSHDYVLT GFISLYSKCG KIKMGSALFR EFRKPDIVAY NAMIHGYTSN
GETELSLSLF KELMLSGARL RSSTLVSLVP VSGHLMLIYA IHGYCLKSNF LSHASVSTAL
TTVYSKLNEI ESARKLFDES PEKSLPSWNA MISGYTQNGL TEDAISLFRE MQKSEFSPNP
VTITCILSAC AQLGALSLGK WVHDLVRSTD FESSIYVSTA LIGMYAKCGS IAEARRLFDL
MTKKNEVTWN TMISGYGLHG QGQEALNIFY EMLNSGITPT PVTFLCVLYA CSHAGLVKEG
DEIFNSMIHR YGFEPSVKHY ACMVDILGRA GHLQRALQFI EAMSIEPGSS VWETLLGACR
IHKDTNLART VSEKLFELDP DNVGYHVLLS NIHSADRNYP QAATVRQTAK KRKLAKAPGY
TLIEIGETPH VFTSGDQSHP QVKEIYEKLE KLEGKMREAG YQPETELALH DVEEEERELM
VKVHSERLAI AFGLIATEPG TEIRIIKNLR VCLDCHTVTK LISKITERVI VVRDANRFHH
FKDGVCSCGD YW
