PP342_ARATH
ID PP342_ARATH Reviewed; 904 AA.
AC O65567;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 25-MAY-2022, entry version 121.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g30825, chloroplastic;
DE Flags: Precursor;
GN OrderedLocusNames=At4g30825; ORFNames=F6I18.270, T10C21.4;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAA18211.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=CAB79800.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL022198; CAA18211.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL109787; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AL161577; CAB79800.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002687; AEE85815.1; -; Genomic_DNA.
DR PIR; G85360; G85360.
DR RefSeq; NP_567856.1; NM_119229.2.
DR AlphaFoldDB; O65567; -.
DR SMR; O65567; -.
DR IntAct; O65567; 8.
DR STRING; 3702.AT4G30825.1; -.
DR PaxDb; O65567; -.
DR PRIDE; O65567; -.
DR ProteomicsDB; 249240; -.
DR EnsemblPlants; AT4G30825.1; AT4G30825.1; AT4G30825.
DR GeneID; 829206; -.
DR Gramene; AT4G30825.1; AT4G30825.1; AT4G30825.
DR KEGG; ath:AT4G30825; -.
DR Araport; AT4G30825; -.
DR TAIR; locus:505006535; AT4G30825.
DR eggNOG; KOG3800; Eukaryota.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_011764_0_0_1; -.
DR InParanoid; O65567; -.
DR OMA; YYWILKS; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; O65567; -.
DR PRO; PR:O65567; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; O65567; baseline and differential.
DR Genevisible; O65567; AT.
DR GO; GO:0009570; C:chloroplast stroma; IDA:TAIR.
DR GO; GO:0005675; C:transcription factor TFIIH holo complex; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0006281; P:DNA repair; IBA:GO_Central.
DR GO; GO:0000079; P:regulation of cyclin-dependent protein serine/threonine kinase activity; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF13041; PPR_2; 3.
DR Pfam; PF13812; PPR_3; 2.
DR TIGRFAMs; TIGR00756; PPR; 11.
DR PROSITE; PS51375; PPR; 20.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..61
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 62..904
FT /note="Pentatricopeptide repeat-containing protein
FT At4g30825, chloroplastic"
FT /id="PRO_0000363459"
FT REPEAT 173..203
FT /note="PPR 1"
FT REPEAT 209..243
FT /note="PPR 2"
FT REPEAT 244..274
FT /note="PPR 3"
FT REPEAT 278..312
FT /note="PPR 4"
FT REPEAT 313..347
FT /note="PPR 5"
FT REPEAT 348..382
FT /note="PPR 6"
FT REPEAT 383..417
FT /note="PPR 7"
FT REPEAT 418..452
FT /note="PPR 8"
FT REPEAT 487..521
FT /note="PPR 9"
FT REPEAT 522..553
FT /note="PPR 10"
FT REPEAT 557..591
FT /note="PPR 11"
FT REPEAT 592..622
FT /note="PPR 12"
FT REPEAT 628..662
FT /note="PPR 13"
FT REPEAT 663..697
FT /note="PPR 14"
FT REPEAT 698..732
FT /note="PPR 15"
FT REPEAT 733..766
FT /note="PPR 16"
FT REPEAT 767..801
FT /note="PPR 17"
FT REPEAT 802..836
FT /note="PPR 18"
FT REPEAT 837..871
FT /note="PPR 19"
FT REPEAT 872..904
FT /note="PPR 20"
FT REGION 75..94
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 904 AA; 103309 MW; 96C0A0C0147B25CD CRC64;
MGSLRFSIPL DPFDSKRKRF HFSANPSQFP DQFPIHFVTS SIHATRASSI GSSTRVLDKI
RVSSLGTEAN ENAINSASAA PVERSRSSKL SGDQRGTKKY VARKFSFRRG SNDLELENLF
VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI
LRVLGRREEW DRAEDLIKEL CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG
VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG
KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY EEAKHYYQEL KRCGYKPNSF
NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF
HNHIRLNQTS FSSLVMAYVK HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT
DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI
HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV TFNVLLDVYG KAKLFKKVNE
LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK
DKQMEKFRSI LKRMKKSTSG PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS
YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
QMGI
