PP343_ARATH
ID PP343_ARATH Reviewed; 624 AA.
AC O65543; F4JR67;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 03-AUG-2022, entry version 125.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g31070, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E7; OrderedLocusNames=At4g31070; ORFNames=F6I18.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAA18186.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=CAB79825.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL022198; CAA18186.1; ALT_INIT; Genomic_DNA.
DR EMBL; AL161578; CAB79825.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002687; AEE85853.2; -; Genomic_DNA.
DR EMBL; CP002687; ANM67009.1; -; Genomic_DNA.
DR PIR; H85363; H85363.
DR RefSeq; NP_001320098.1; NM_001342052.1.
DR RefSeq; NP_001328866.1; NM_001342053.1.
DR AlphaFoldDB; O65543; -.
DR SMR; O65543; -.
DR PaxDb; O65543; -.
DR PRIDE; O65543; -.
DR ProteomicsDB; 249241; -.
DR EnsemblPlants; AT4G31070.1; AT4G31070.1; AT4G31070.
DR EnsemblPlants; AT4G31070.2; AT4G31070.2; AT4G31070.
DR GeneID; 829234; -.
DR Gramene; AT4G31070.1; AT4G31070.1; AT4G31070.
DR Gramene; AT4G31070.2; AT4G31070.2; AT4G31070.
DR KEGG; ath:AT4G31070; -.
DR Araport; AT4G31070; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_10_1; -.
DR InParanoid; O65543; -.
DR OMA; ACYINLL; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; O65543; -.
DR PRO; PR:O65543; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; O65543; baseline and differential.
DR Genevisible; O65543; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 12.
PE 3: Inferred from homology;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..15
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 16..624
FT /note="Pentatricopeptide repeat-containing protein
FT At4g31070, mitochondrial"
FT /id="PRO_0000363460"
FT REPEAT 56..91
FT /note="PPR 1"
FT REPEAT 92..122
FT /note="PPR 2"
FT REPEAT 123..157
FT /note="PPR 3"
FT REPEAT 158..192
FT /note="PPR 4"
FT REPEAT 195..225
FT /note="PPR 5"
FT REPEAT 226..260
FT /note="PPR 6"
FT REPEAT 261..296
FT /note="PPR 7"
FT REPEAT 297..327
FT /note="PPR 8"
FT REPEAT 328..362
FT /note="PPR 9"
FT REPEAT 363..397
FT /note="PPR 10"
FT REPEAT 398..428
FT /note="PPR 11"
FT REPEAT 429..463
FT /note="PPR 12"
FT REPEAT 464..498
FT /note="PPR 13"
FT REPEAT 499..529
FT /note="PPR 14"
FT REGION 534..610
FT /note="Type E motif"
SQ SEQUENCE 624 AA; 69841 MW; BC9BD98ED8CCE20D CRC64;
MRWVKLGRRV IMSRALSSRL NLELGNKLKG LVSDQFYDEA LRLYKLKIHS LGTNGFTAIL
PSVIKACAFQ QEPFLLGAQL HCLCLKAGAD CDTVVSNSLI SMYAKFSRKY AVRKVFDEML
HRDTVSYCSI INSCCQDGLL YEAMKLIKEM YFYGFIPKSE LVASLLALCT RMGSSSKVAR
MFHALVLVDE RMQESVLLST ALVDMYLKFD DHAAAFHVFD QMEVKNEVSW TAMISGCVAN
QNYEMGVDLF RAMQRENLRP NRVTLLSVLP ACVELNYGSS LVKEIHGFSF RHGCHADERL
TAAFMTMYCR CGNVSLSRVL FETSKVRDVV MWSSMISGYA ETGDCSEVMN LLNQMRKEGI
EANSVTLLAI VSACTNSTLL SFASTVHSQI LKCGFMSHIL LGNALIDMYA KCGSLSAARE
VFYELTEKDL VSWSSMINAY GLHGHGSEAL EIFKGMIKGG HEVDDMAFLA ILSACNHAGL
VEEAQTIFTQ AGKYHMPVTL EHYACYINLL GRFGKIDDAF EVTINMPMKP SARIWSSLLS
ACETHGRLDV AGKIIANELM KSEPDNPANY VLLSKIHTES GNYHAAEEVR RVMQRRKLNK
CYGFSKIEPE LQIEDYQGKS WSPI
