PP345_ARATH
ID PP345_ARATH Reviewed; 763 AA.
AC Q84MA3; Q9SUU9;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g32430, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E40; Synonyms=PCMP-E97; OrderedLocusNames=At4g32430;
GN ORFNames=F8B4.130;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [6]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAA22570.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=CAB79960.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL034567; CAA22570.1; ALT_INIT; Genomic_DNA.
DR EMBL; AL161581; CAB79960.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002687; AEE86058.1; -; Genomic_DNA.
DR EMBL; BT006447; AAP21255.1; -; mRNA.
DR EMBL; AK227348; BAE99358.1; -; mRNA.
DR PIR; T05353; T05353.
DR RefSeq; NP_194969.2; NM_119395.3.
DR AlphaFoldDB; Q84MA3; -.
DR SMR; Q84MA3; -.
DR STRING; 3702.AT4G32430.1; -.
DR PaxDb; Q84MA3; -.
DR PRIDE; Q84MA3; -.
DR ProteomicsDB; 249242; -.
DR EnsemblPlants; AT4G32430.1; AT4G32430.1; AT4G32430.
DR GeneID; 829378; -.
DR Gramene; AT4G32430.1; AT4G32430.1; AT4G32430.
DR KEGG; ath:AT4G32430; -.
DR Araport; AT4G32430; -.
DR TAIR; locus:2127801; AT4G32430.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_6_1; -.
DR InParanoid; Q84MA3; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q84MA3; -.
DR PRO; PR:Q84MA3; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q84MA3; baseline and differential.
DR Genevisible; Q84MA3; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:1905639; P:positive regulation of mitochondrial mRNA catabolic process; IMP:TAIR.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 3.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 13.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..38
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 39..763
FT /note="Pentatricopeptide repeat-containing protein
FT At4g32430, mitochondrial"
FT /id="PRO_0000363462"
FT REPEAT 77..109
FT /note="PPR 1"
FT REPEAT 110..140
FT /note="PPR 2"
FT REPEAT 141..172
FT /note="PPR 3"
FT REPEAT 173..207
FT /note="PPR 4"
FT REPEAT 208..238
FT /note="PPR 5"
FT REPEAT 239..274
FT /note="PPR 6"
FT REPEAT 275..309
FT /note="PPR 7"
FT REPEAT 310..344
FT /note="PPR 8"
FT REPEAT 350..370
FT /note="PPR 9"
FT REPEAT 371..405
FT /note="PPR 10"
FT REPEAT 406..436
FT /note="PPR 11"
FT REPEAT 437..471
FT /note="PPR 12"
FT REPEAT 472..507
FT /note="PPR 13"
FT REPEAT 508..538
FT /note="PPR 14"
FT REPEAT 539..573
FT /note="PPR 15"
FT REPEAT 574..604
FT /note="PPR 16"
FT REPEAT 610..640
FT /note="PPR 17"
FT REGION 645..720
FT /note="Type E motif"
FT REGION 724..756
FT /note="Type E(+) motif"
SQ SEQUENCE 763 AA; 85184 MW; AE3766E28F9A0988 CRC64;
MTLLNYLHCN RSKSFLFQRF YSPYRIAHKL FDGSSQRNAT TSINHSISES LRRNSPARAL
SIFKENLQLG YFGRHMDEVT LCLALKACRG DLKRGCQIHG FSTTSGFTSF VCVSNAVMGM
YRKAGRFDNA LCIFENLVDP DVVSWNTILS GFDDNQIALN FVVRMKSAGV VFDAFTYSTA
LSFCVGSEGF LLGLQLQSTV VKTGLESDLV VGNSFITMYS RSGSFRGARR VFDEMSFKDM
ISWNSLLSGL SQEGTFGFEA VVIFRDMMRE GVELDHVSFT SVITTCCHET DLKLARQIHG
LCIKRGYESL LEVGNILMSR YSKCGVLEAV KSVFHQMSER NVVSWTTMIS SNKDDAVSIF
LNMRFDGVYP NEVTFVGLIN AVKCNEQIKE GLKIHGLCIK TGFVSEPSVG NSFITLYAKF
EALEDAKKAF EDITFREIIS WNAMISGFAQ NGFSHEALKM FLSAAAETMP NEYTFGSVLN
AIAFAEDISV KQGQRCHAHL LKLGLNSCPV VSSALLDMYA KRGNIDESEK VFNEMSQKNQ
FVWTSIISAY SSHGDFETVM NLFHKMIKEN VAPDLVTFLS VLTACNRKGM VDKGYEIFNM
MIEVYNLEPS HEHYSCMVDM LGRAGRLKEA EELMSEVPGG PGESMLQSML GSCRLHGNVK
MGAKVAELAM EMKPELSGSY VQMYNIYAEK EEWDKAAEIR KAMRKKNVSK EAGFSWIDVG
DTEGSLTMQG FSSGDKSHPK SDEIYRMVEI IGLEMNLEGK VAV
