PP350_ARATH
ID PP350_ARATH Reviewed; 804 AA.
AC O49619;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-1998, sequence version 1.
DT 25-MAY-2022, entry version 124.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g35130, chloroplastic;
DE Flags: Precursor;
GN Name=PCMP-H27; OrderedLocusNames=At4g35130; ORFNames=M4E13.180;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL022023; CAA17777.1; -; Genomic_DNA.
DR EMBL; AL161586; CAB80230.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE86471.1; -; Genomic_DNA.
DR PIR; T05783; T05783.
DR RefSeq; NP_195239.1; NM_119679.2.
DR AlphaFoldDB; O49619; -.
DR SMR; O49619; -.
DR STRING; 3702.AT4G35130.1; -.
DR PaxDb; O49619; -.
DR PRIDE; O49619; -.
DR ProteomicsDB; 249244; -.
DR EnsemblPlants; AT4G35130.1; AT4G35130.1; AT4G35130.
DR GeneID; 829665; -.
DR Gramene; AT4G35130.1; AT4G35130.1; AT4G35130.
DR KEGG; ath:AT4G35130; -.
DR Araport; AT4G35130; -.
DR TAIR; locus:2131631; AT4G35130.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; O49619; -.
DR OMA; VKCCARL; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; O49619; -.
DR PRO; PR:O49619; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; O49619; baseline and differential.
DR Genevisible; O49619; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF13041; PPR_2; 3.
DR Pfam; PF13812; PPR_3; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 15.
PE 3: Inferred from homology;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..19
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 20..804
FT /note="Pentatricopeptide repeat-containing protein
FT At4g35130, chloroplastic"
FT /id="PRO_0000363467"
FT REPEAT 63..93
FT /note="PPR 1"
FT REPEAT 94..128
FT /note="PPR 2"
FT REPEAT 129..163
FT /note="PPR 3"
FT REPEAT 164..194
FT /note="PPR 4"
FT REPEAT 195..229
FT /note="PPR 5"
FT REPEAT 230..264
FT /note="PPR 6"
FT REPEAT 266..296
FT /note="PPR 7"
FT REPEAT 297..332
FT /note="PPR 8"
FT REPEAT 333..363
FT /note="PPR 9"
FT REPEAT 364..394
FT /note="PPR 10"
FT REPEAT 395..429
FT /note="PPR 11"
FT REPEAT 430..464
FT /note="PPR 12"
FT REPEAT 465..495
FT /note="PPR 13"
FT REPEAT 496..530
FT /note="PPR 14"
FT REPEAT 531..561
FT /note="PPR 15"
FT REPEAT 567..597
FT /note="PPR 16"
FT REGION 602..677
FT /note="Type E motif"
FT REGION 678..708
FT /note="Type E(+) motif"
FT REGION 710..804
FT /note="Type DYW motif"
SQ SEQUENCE 804 AA; 90786 MW; 22FFFF5D7BC50D54 CRC64;
MAATLLSQCY RIYNSDACKC VSSENHQTTG KRNGNRNLEF DSGISKPARL VLRDRYKVTK
QVNDPALTRA LRGFADSRLM EDALQLFDEM NKADAFLWNV MIKGFTSCGL YIEAVQFYSR
MVFAGVKADT FTYPFVIKSV AGISSLEEGK KIHAMVIKLG FVSDVYVCNS LISLYMKLGC
AWDAEKVFEE MPERDIVSWN SMISGYLALG DGFSSLMLFK EMLKCGFKPD RFSTMSALGA
CSHVYSPKMG KEIHCHAVRS RIETGDVMVM TSILDMYSKY GEVSYAERIF NGMIQRNIVA
WNVMIGCYAR NGRVTDAFLC FQKMSEQNGL QPDVITSINL LPASAILEGR TIHGYAMRRG
FLPHMVLETA LIDMYGECGQ LKSAEVIFDR MAEKNVISWN SIIAAYVQNG KNYSALELFQ
ELWDSSLVPD STTIASILPA YAESLSLSEG REIHAYIVKS RYWSNTIILN SLVHMYAMCG
DLEDARKCFN HILLKDVVSW NSIIMAYAVH GFGRISVWLF SEMIASRVNP NKSTFASLLA
ACSISGMVDE GWEYFESMKR EYGIDPGIEH YGCMLDLIGR TGNFSAAKRF LEEMPFVPTA
RIWGSLLNAS RNHKDITIAE FAAEQIFKME HDNTGCYVLL LNMYAEAGRW EDVNRIKLLM
ESKGISRTSS RSTVEAKGKS HVFTNGDRSH VATNKIYEVL DVVSRMVGEE DIYVHCVSRL
RPETLVKSRS NSPRRHSVRL ATCFGLISTE TGRRVTVRNN TRICRKCHEF LEKASRLTRR
EIVVGDSKIF HHFSNGRCSC GNYW
