PP355_ARATH
ID PP355_ARATH Reviewed; 559 AA.
AC Q9SZK1;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g38010;
GN Name=PCMP-E45; OrderedLocusNames=At4g38010; ORFNames=F20D10.130;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL035538; CAB37541.1; -; Genomic_DNA.
DR EMBL; AL161592; CAB80466.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE86863.1; -; Genomic_DNA.
DR PIR; T05628; T05628.
DR RefSeq; NP_195514.1; NM_119962.2.
DR AlphaFoldDB; Q9SZK1; -.
DR SMR; Q9SZK1; -.
DR PaxDb; Q9SZK1; -.
DR PRIDE; Q9SZK1; -.
DR ProteomicsDB; 249248; -.
DR EnsemblPlants; AT4G38010.1; AT4G38010.1; AT4G38010.
DR GeneID; 829957; -.
DR Gramene; AT4G38010.1; AT4G38010.1; AT4G38010.
DR KEGG; ath:AT4G38010; -.
DR Araport; AT4G38010; -.
DR TAIR; locus:2121055; AT4G38010.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_1_1; -.
DR InParanoid; Q9SZK1; -.
DR OMA; YAVSDRW; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SZK1; -.
DR PRO; PR:Q9SZK1; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9SZK1; baseline and differential.
DR Genevisible; Q9SZK1; AT.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 12.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..559
FT /note="Pentatricopeptide repeat-containing protein
FT At4g38010"
FT /id="PRO_0000363472"
FT REPEAT 70..104
FT /note="PPR 1"
FT REPEAT 105..139
FT /note="PPR 2"
FT REPEAT 140..170
FT /note="PPR 3"
FT REPEAT 171..201
FT /note="PPR 4"
FT REPEAT 203..233
FT /note="PPR 5"
FT REPEAT 238..268
FT /note="PPR 6"
FT REPEAT 269..304
FT /note="PPR 7"
FT REPEAT 305..339
FT /note="PPR 8"
FT REPEAT 340..370
FT /note="PPR 9"
FT REPEAT 371..405
FT /note="PPR 10"
FT REPEAT 406..440
FT /note="PPR 11"
FT REPEAT 443..473
FT /note="PPR 12"
FT REGION 478..554
FT /note="Type E motif"
SQ SEQUENCE 559 AA; 62434 MW; 6CB954EFA6C49D5D CRC64;
MYLPEKSVLL ELISRCSSLR VFKQIQTQLI TRDLLRDDLI INKVVTFLGK SADFASYSSV
ILHSIRSVLS SFSYNTLLSS YAVCDKPRVT IFAYKTFVSN GFSPDMFTFP PVFKACGKFS
GIREGKQIHG IVTKMGFYDD IYVQNSLVHF YGVCGESRNA CKVFGEMPVR DVVSWTGIIT
GFTRTGLYKE ALDTFSKMDV EPNLATYVCV LVSSGRVGCL SLGKGIHGLI LKRASLISLE
TGNALIDMYV KCEQLSDAMR VFGELEKKDK VSWNSMISGL VHCERSKEAI DLFSLMQTSS
GIKPDGHILT SVLSACASLG AVDHGRWVHE YILTAGIKWD THIGTAIVDM YAKCGYIETA
LEIFNGIRSK NVFTWNALLG GLAIHGHGLE SLRYFEEMVK LGFKPNLVTF LAALNACCHT
GLVDEGRRYF HKMKSREYNL FPKLEHYGCM IDLLCRAGLL DEALELVKAM PVKPDVRICG
AILSACKNRG TLMELPKEIL DSFLDIEFED SGVYVLLSNI FAANRRWDDV ARIRRLMKVK
GISKVPGSSY IEKFMTLDQ
