PP356_ARATH
ID PP356_ARATH Reviewed; 302 AA.
AC Q9SZL5; Q8S9H9;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 110.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g38150;
GN OrderedLocusNames=At4g38150; ORFNames=F20D10.270;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL035538; CAB37555.1; -; Genomic_DNA.
DR EMBL; AL161593; CAB80480.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE86884.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE86885.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM67822.1; -; Genomic_DNA.
DR EMBL; AK119139; BAC43709.1; -; mRNA.
DR EMBL; AY075695; AAL77701.1; -; mRNA.
DR EMBL; AY143852; AAN28791.1; -; mRNA.
DR PIR; T05642; T05642.
DR RefSeq; NP_001031806.1; NM_001036729.1.
DR RefSeq; NP_001320158.1; NM_001342482.1.
DR RefSeq; NP_195528.1; NM_119976.5.
DR AlphaFoldDB; Q9SZL5; -.
DR SMR; Q9SZL5; -.
DR BioGRID; 15251; 1.
DR IntAct; Q9SZL5; 1.
DR STRING; 3702.AT4G38150.1; -.
DR PaxDb; Q9SZL5; -.
DR PRIDE; Q9SZL5; -.
DR ProteomicsDB; 248998; -.
DR EnsemblPlants; AT4G38150.1; AT4G38150.1; AT4G38150.
DR EnsemblPlants; AT4G38150.2; AT4G38150.2; AT4G38150.
DR EnsemblPlants; AT4G38150.3; AT4G38150.3; AT4G38150.
DR GeneID; 829971; -.
DR Gramene; AT4G38150.1; AT4G38150.1; AT4G38150.
DR Gramene; AT4G38150.2; AT4G38150.2; AT4G38150.
DR Gramene; AT4G38150.3; AT4G38150.3; AT4G38150.
DR KEGG; ath:AT4G38150; -.
DR Araport; AT4G38150; -.
DR TAIR; locus:2120983; AT4G38150.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_058924_1_1_1; -.
DR InParanoid; Q9SZL5; -.
DR OMA; IEFCLEM; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SZL5; -.
DR PRO; PR:Q9SZL5; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9SZL5; baseline and differential.
DR Genevisible; Q9SZL5; AT.
DR Gene3D; 1.25.40.10; -; 1.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 1.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 4.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..302
FT /note="Pentatricopeptide repeat-containing protein
FT At4g38150"
FT /id="PRO_0000363473"
FT REPEAT 130..164
FT /note="PPR 1"
FT REPEAT 165..199
FT /note="PPR 2"
FT REPEAT 200..234
FT /note="PPR 3"
FT REPEAT 235..269
FT /note="PPR 4"
FT REGION 26..82
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 94..116
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 26..45
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 57..71
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 226
FT /note="E -> D (in Ref. 4; AAN28791/AAL77701)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 302 AA; 33454 MW; 0752DB658C036AB2 CRC64;
MVPSSKAVVF ARQMAKQIRV TTPSMSATRF LSTGDNGQVD EQQNPPEPLP NRPLRGERSS
NSHREPPARQ AHNLGKSDTT LSDDGFLEQF KLGVNQDSRE TPKPEQYPQE PLPPPEDSDE
IFKKMKEGGL IPNAVAMLDG LCKDGLVQEA MKLFGLMRDK GTIPEVVIYT AVVEAFCKAH
KIEDAKRIFR KMQNNGIAPN AFSYGVLVQG LYNCNMLDDA VAFCSEMLES GHSPNVPTFV
ELVDALCRVK GVEQAQSAID TLNQKGFAVN VKAVKEFMDK RAPFPSLAWE AIFKKKPTEK
PF
