PP357_ARATH
ID PP357_ARATH Reviewed; 834 AA.
AC Q9SVA5;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g39530;
GN Name=PCMP-E52; OrderedLocusNames=At4g39530; ORFNames=F23K16.160;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL078620; CAB44688.1; -; Genomic_DNA.
DR EMBL; AL161595; CAB80616.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE87082.1; -; Genomic_DNA.
DR PIR; T09369; T09369.
DR RefSeq; NP_195663.1; NM_120113.2.
DR AlphaFoldDB; Q9SVA5; -.
DR SMR; Q9SVA5; -.
DR STRING; 3702.AT4G39530.1; -.
DR iPTMnet; Q9SVA5; -.
DR PaxDb; Q9SVA5; -.
DR PRIDE; Q9SVA5; -.
DR ProteomicsDB; 248999; -.
DR EnsemblPlants; AT4G39530.1; AT4G39530.1; AT4G39530.
DR GeneID; 830107; -.
DR Gramene; AT4G39530.1; AT4G39530.1; AT4G39530.
DR KEGG; ath:AT4G39530; -.
DR Araport; AT4G39530; -.
DR TAIR; locus:2122551; AT4G39530.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_6_1; -.
DR InParanoid; Q9SVA5; -.
DR OMA; MIFGHAQ; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SVA5; -.
DR PRO; PR:Q9SVA5; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9SVA5; baseline and differential.
DR Genevisible; Q9SVA5; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 2.
DR Pfam; PF01535; PPR; 9.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 18.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..834
FT /note="Pentatricopeptide repeat-containing protein
FT At4g39530"
FT /id="PRO_0000363474"
FT REPEAT 78..112
FT /note="PPR 1"
FT REPEAT 113..144
FT /note="PPR 2"
FT REPEAT 145..181
FT /note="PPR 3"
FT REPEAT 182..212
FT /note="PPR 4"
FT REPEAT 213..247
FT /note="PPR 5"
FT REPEAT 248..282
FT /note="PPR 6"
FT REPEAT 283..313
FT /note="PPR 7"
FT REPEAT 314..348
FT /note="PPR 8"
FT REPEAT 349..383
FT /note="PPR 9"
FT REPEAT 384..414
FT /note="PPR 10"
FT REPEAT 415..452
FT /note="PPR 11"
FT REPEAT 453..487
FT /note="PPR 12"
FT REPEAT 488..518
FT /note="PPR 13"
FT REPEAT 519..553
FT /note="PPR 14"
FT REPEAT 554..588
FT /note="PPR 15"
FT REPEAT 589..619
FT /note="PPR 16"
FT REPEAT 620..654
FT /note="PPR 17"
FT REPEAT 655..689
FT /note="PPR 18"
FT REPEAT 690..720
FT /note="PPR 19"
FT REGION 725..800
FT /note="Type E motif"
FT REGION 801..831
FT /note="Type E(+) motif"
SQ SEQUENCE 834 AA; 93794 MW; 277C14CC6148E457 CRC64;
MRSYRCWRKV QETIRLYSSS SSSASSLLEF VNADFPSTIG IRGRREFARL LQLRASDDLL
HYQNVVHGQI IVWGLELDTY LSNILINLYS RAGGMVYARK VFEKMPERNL VSWSTMVSAC
NHHGIYEESL VVFLEFWRTR KDSPNEYILS SFIQACSGLD GRGRWMVFQL QSFLVKSGFD
RDVYVGTLLI DFYLKDGNID YARLVFDALP EKSTVTWTTM ISGCVKMGRS YVSLQLFYQL
MEDNVVPDGY ILSTVLSACS ILPFLEGGKQ IHAHILRYGL EMDASLMNVL IDSYVKCGRV
IAAHKLFNGM PNKNIISWTT LLSGYKQNAL HKEAMELFTS MSKFGLKPDM YACSSILTSC
ASLHALGFGT QVHAYTIKAN LGNDSYVTNS LIDMYAKCDC LTDARKVFDI FAAADVVLFN
AMIEGYSRLG TQWELHEALN IFRDMRFRLI RPSLLTFVSL LRASASLTSL GLSKQIHGLM
FKYGLNLDIF AGSALIDVYS NCYCLKDSRL VFDEMKVKDL VIWNSMFAGY VQQSENEEAL
NLFLELQLSR ERPDEFTFAN MVTAAGNLAS VQLGQEFHCQ LLKRGLECNP YITNALLDMY
AKCGSPEDAH KAFDSAASRD VVCWNSVISS YANHGEGKKA LQMLEKMMSE GIEPNYITFV
GVLSACSHAG LVEDGLKQFE LMLRFGIEPE TEHYVCMVSL LGRAGRLNKA RELIEKMPTK
PAAIVWRSLL SGCAKAGNVE LAEHAAEMAI LSDPKDSGSF TMLSNIYASK GMWTEAKKVR
ERMKVEGVVK EPGRSWIGIN KEVHIFLSKD KSHCKANQIY EVLDDLLVQI RGVS
