PP359_ARATH
ID PP359_ARATH Reviewed; 775 AA.
AC Q3E9N1;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 03-AUG-2022, entry version 97.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g39952, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E98; OrderedLocusNames=At4g39952; ORFNames=T5J17.13;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL035708; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AL161596; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002687; AEE87144.1; -; Genomic_DNA.
DR RefSeq; NP_680777.2; NM_148411.3.
DR AlphaFoldDB; Q3E9N1; -.
DR SMR; Q3E9N1; -.
DR STRING; 3702.AT4G39952.1; -.
DR PaxDb; Q3E9N1; -.
DR PRIDE; Q3E9N1; -.
DR ProteomicsDB; 249250; -.
DR EnsemblPlants; AT4G39952.1; AT4G39952.1; AT4G39952.
DR GeneID; 830155; -.
DR Gramene; AT4G39952.1; AT4G39952.1; AT4G39952.
DR KEGG; ath:AT4G39952; -.
DR Araport; AT4G39952; -.
DR TAIR; locus:504955244; AT4G39952.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_10_1; -.
DR InParanoid; Q3E9N1; -.
DR OMA; CYSIKHL; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q3E9N1; -.
DR PRO; PR:Q3E9N1; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q3E9N1; baseline and differential.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 9.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 19.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..17
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 18..775
FT /note="Pentatricopeptide repeat-containing protein
FT At4g39952, mitochondrial"
FT /id="PRO_0000363476"
FT REPEAT 58..88
FT /note="PPR 1"
FT REPEAT 89..123
FT /note="PPR 2"
FT REPEAT 124..158
FT /note="PPR 3"
FT REPEAT 160..190
FT /note="PPR 4"
FT REPEAT 191..225
FT /note="PPR 5"
FT REPEAT 229..263
FT /note="PPR 6"
FT REPEAT 264..294
FT /note="PPR 7"
FT REPEAT 295..329
FT /note="PPR 8"
FT REPEAT 330..364
FT /note="PPR 9"
FT REPEAT 365..395
FT /note="PPR 10"
FT REPEAT 397..431
FT /note="PPR 11"
FT REPEAT 432..466
FT /note="PPR 12"
FT REPEAT 467..493
FT /note="PPR 13"
FT REPEAT 497..531
FT /note="PPR 14"
FT REPEAT 532..566
FT /note="PPR 15"
FT REPEAT 567..597
FT /note="PPR 16"
FT REPEAT 598..632
FT /note="PPR 17"
FT REPEAT 633..667
FT /note="PPR 18"
FT REPEAT 668..698
FT /note="PPR 19"
FT REGION 703..775
FT /note="Type E motif; degenerate"
SQ SEQUENCE 775 AA; 85828 MW; E0DAC5534CE4B9FE CRC64;
MLRRLLKPNL VVTLRKLSSS SASYVDRHIS VILCDQSLSL ESLRKHNALI ITGGLSENIF
VASKLISSYA SYGKPNLSSR VFHLVTRRDI FLWNSIIKAH FSNGDYARSL CFFFSMLLSG
QSPDHFTAPM VVSACAELLW FHVGTFVHGL VLKHGGFDRN TAVGASFVYF YSKCGFLQDA
CLVFDEMPDR DVVAWTAIIS GHVQNGESEG GLGYLCKMHS AGSDVDKPNP RTLECGFQAC
SNLGALKEGR CLHGFAVKNG LASSKFVQSS MFSFYSKSGN PSEAYLSFRE LGDEDMFSWT
SIIASLARSG DMEESFDMFW EMQNKGMHPD GVVISCLINE LGKMMLVPQG KAFHGFVIRH
CFSLDSTVCN SLLSMYCKFE LLSVAEKLFC RISEEGNKEA WNTMLKGYGK MKCHVKCIEL
FRKIQNLGIE IDSASATSVI SSCSHIGAVL LGKSLHCYVV KTSLDLTISV VNSLIDLYGK
MGDLTVAWRM FCEADTNVIT WNAMIASYVH CEQSEKAIAL FDRMVSENFK PSSITLVTLL
MACVNTGSLE RGQMIHRYIT ETEHEMNLSL SAALIDMYAK CGHLEKSREL FDAGNQKDAV
CWNVMISGYG MHGDVESAIA LFDQMEESDV KPTGPTFLAL LSACTHAGLV EQGKKLFLKM
HQYDVKPNLK HYSCLVDLLS RSGNLEEAES TVMSMPFSPD GVIWGTLLSS CMTHGEFEMG
IRMAERAVAS DPQNDGYYIM LANMYSAAGK WEEAERAREM MRESGVGKRA GHSVV
