PP360_ARATH
ID PP360_ARATH Reviewed; 729 AA.
AC Q9LFC5;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g01110;
GN OrderedLocusNames=At5g01110; ORFNames=F7J8_90;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL137189; CAB69839.1; -; Genomic_DNA.
DR EMBL; CP002688; AED90300.1; -; Genomic_DNA.
DR EMBL; BT005783; AAO64186.1; -; mRNA.
DR EMBL; AK228473; BAF00399.1; -; mRNA.
DR PIR; T45951; T45951.
DR RefSeq; NP_195731.1; NM_120189.5.
DR AlphaFoldDB; Q9LFC5; -.
DR SMR; Q9LFC5; -.
DR PaxDb; Q9LFC5; -.
DR PRIDE; Q9LFC5; -.
DR ProteomicsDB; 249251; -.
DR EnsemblPlants; AT5G01110.1; AT5G01110.1; AT5G01110.
DR GeneID; 831824; -.
DR Gramene; AT5G01110.1; AT5G01110.1; AT5G01110.
DR KEGG; ath:AT5G01110; -.
DR Araport; AT5G01110; -.
DR TAIR; locus:2150024; AT5G01110.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9LFC5; -.
DR PhylomeDB; Q9LFC5; -.
DR PRO; PR:Q9LFC5; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LFC5; baseline and differential.
DR Genevisible; Q9LFC5; AT.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 6.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 15.
DR PROSITE; PS51375; PPR; 17.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..729
FT /note="Pentatricopeptide repeat-containing protein
FT At5g01110"
FT /id="PRO_0000363497"
FT REPEAT 112..147
FT /note="PPR 1"
FT REPEAT 164..198
FT /note="PPR 2"
FT REPEAT 199..233
FT /note="PPR 3"
FT REPEAT 234..268
FT /note="PPR 4"
FT REPEAT 269..303
FT /note="PPR 5"
FT REPEAT 304..338
FT /note="PPR 6"
FT REPEAT 339..373
FT /note="PPR 7"
FT REPEAT 374..408
FT /note="PPR 8"
FT REPEAT 409..443
FT /note="PPR 9"
FT REPEAT 444..478
FT /note="PPR 10"
FT REPEAT 479..513
FT /note="PPR 11"
FT REPEAT 514..548
FT /note="PPR 12"
FT REPEAT 549..583
FT /note="PPR 13"
FT REPEAT 584..618
FT /note="PPR 14"
FT REPEAT 619..649
FT /note="PPR 15"
FT REPEAT 656..690
FT /note="PPR 16"
FT REPEAT 691..725
FT /note="PPR 17"
FT REGION 26..45
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 729 AA; 81881 MW; 30A377F5AD3878C4 CRC64;
MIVHRIIPSR VKDPLTRFKP LKNLTTSSSP VFEPSSSSSS SSSSASFSVS DSFLVEKICF
SLKQGNNNVR NHLIRLNPLA VVEVLYRCRN DLTLGQRFVD QLGFHFPNFK HTSLSLSAMI
HILVRSGRLS DAQSCLLRMI RRSGVSRLEI VNSLDSTFSN CGSNDSVFDL LIRTYVQARK
LREAHEAFTL LRSKGFTVSI DACNALIGSL VRIGWVELAW GVYQEISRSG VGINVYTLNI
MVNALCKDGK MEKVGTFLSQ VQEKGVYPDI VTYNTLISAY SSKGLMEEAF ELMNAMPGKG
FSPGVYTYNT VINGLCKHGK YERAKEVFAE MLRSGLSPDS TTYRSLLMEA CKKGDVVETE
KVFSDMRSRD VVPDLVCFSS MMSLFTRSGN LDKALMYFNS VKEAGLIPDN VIYTILIQGY
CRKGMISVAM NLRNEMLQQG CAMDVVTYNT ILHGLCKRKM LGEADKLFNE MTERALFPDS
YTLTILIDGH CKLGNLQNAM ELFQKMKEKR IRLDVVTYNT LLDGFGKVGD IDTAKEIWAD
MVSKEILPTP ISYSILVNAL CSKGHLAEAF RVWDEMISKN IKPTVMICNS MIKGYCRSGN
ASDGESFLEK MISEGFVPDC ISYNTLIYGF VREENMSKAF GLVKKMEEEQ GGLVPDVFTY
NSILHGFCRQ NQMKEAEVVL RKMIERGVNP DRSTYTCMIN GFVSQDNLTE AFRIHDEMLQ
RGFSPDDKF
