PP361_ARATH
ID PP361_ARATH Reviewed; 852 AA.
AC Q8GYL7; Q9LZ02;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 03-MAY-2011, sequence version 3.
DT 03-AUG-2022, entry version 108.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g02830, chloroplastic;
DE Flags: Precursor;
GN OrderedLocusNames=At5g02830; ORFNames=F9G14_140;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB86037.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL162973; CAB86037.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED90523.1; -; Genomic_DNA.
DR EMBL; AK117525; BAC42187.2; -; mRNA.
DR PIR; T48304; T48304.
DR RefSeq; NP_195903.2; NM_120361.5.
DR AlphaFoldDB; Q8GYL7; -.
DR SMR; Q8GYL7; -.
DR STRING; 3702.AT5G02830.1; -.
DR iPTMnet; Q8GYL7; -.
DR PaxDb; Q8GYL7; -.
DR PRIDE; Q8GYL7; -.
DR ProteomicsDB; 249252; -.
DR EnsemblPlants; AT5G02830.1; AT5G02830.1; AT5G02830.
DR GeneID; 831772; -.
DR Gramene; AT5G02830.1; AT5G02830.1; AT5G02830.
DR KEGG; ath:AT5G02830; -.
DR Araport; AT5G02830; -.
DR TAIR; locus:2151236; AT5G02830.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_017214_0_0_1; -.
DR InParanoid; Q8GYL7; -.
DR OMA; YQANDYY; -.
DR OrthoDB; 1344243at2759; -.
DR PRO; PR:Q8GYL7; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q8GYL7; baseline and differential.
DR Genevisible; Q8GYL7; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF13812; PPR_3; 1.
DR Pfam; PF17177; PPR_long; 1.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..25
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 26..852
FT /note="Pentatricopeptide repeat-containing protein
FT At5g02830, chloroplastic"
FT /id="PRO_0000363498"
FT REPEAT 334..364
FT /note="PPR 1"
FT REPEAT 373..407
FT /note="PPR 2"
FT REPEAT 408..442
FT /note="PPR 3"
FT REPEAT 443..477
FT /note="PPR 4"
FT REPEAT 525..557
FT /note="PPR 5"
FT REPEAT 558..592
FT /note="PPR 6"
FT REPEAT 593..627
FT /note="PPR 7"
FT REPEAT 628..665
FT /note="PPR 8"
FT REGION 17..60
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 30..60
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 687
FT /note="Q -> R (in Ref. 3; BAC42187)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 852 AA; 95217 MW; EF45CC6569F27449 CRC64;
MRDFVIVFGS SSAITNPHHH HRRCYATAPE SNRKTKSNSS FTKLLPSLPQ QHSPSPASVS
ATHSLSSHFS NVVRWIPDGS LEYYADFASK LAEDGRIEDV ALIAETLAAE SGANVARFAS
MVDYDLLSKG ISSNLRQGKI ESVVYTLKRI EKVGIAPLDL VDDSSVKLMR KQFRAMANSV
QVEKAIDLME ILAGLGFKIK ELVDPFDVVK SCVEISNPQL AIRYACLLPH TELLLCRIIH
GFGKKGDMVS VMTAYEACKQ ILDTPNMYIC RTMIDVCGLC GDYVKSRYIY EDLLKENIKP
NIYVINSLMN VNSHDLGYTL KVYKNMQILD VTADMTSYNI LLKTCCLAGR VDLAQDIYKE
AKRMESSGLL KLDAFTYCTI IKVFADAKMW KWALKVKDDM KSVGVTPNTH TWSSLISACA
NAGLVEQANH LFEEMLASGC EPNSQCFNIL LHACVEACQY DRAFRLFQSW KGSSVNESLY
ADDIVSKGRT SSPNILKNNG PGSLVNRNSN SPYIQASKRF CFKPTTATYN ILLKACGTDY
YRGKELMDEM KSLGLSPNQI TWSTLIDMCG GSGDVEGAVR ILRTMHSAGT RPDVVAYTTA
IKICAENKCL KLAFSLFEEM RRYQIKPNWV TYNTLLKARS KYGSLLEVRQ CLAIYQDMRN
AGYKPNDHFL KELIEEWCEG VIQENGQSQD KISDQEGDNA GRPVSLLIEK VATHMQERTA
GNLAIDLQGL TKIEARLVVL AVLRMIKEDY MRGDVVIDDV LIIIGTDEAN TVSGKQEITV
QEALVKLLRD ELSLVVLPAG QRNIIQDAHC VDDADQENTK SFVSISSTRR PAILERLMVT
KASLYQWLQR RK
