PP362_ARATH
ID PP362_ARATH Reviewed; 819 AA.
AC Q9LYZ9;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g02860;
GN OrderedLocusNames=At5g02860; ORFNames=F9G14_170;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL162973; CAB86040.1; -; Genomic_DNA.
DR EMBL; CP002688; AED90528.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70645.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70646.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70647.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70648.1; -; Genomic_DNA.
DR PIR; T48307; T48307.
DR RefSeq; NP_001332236.1; NM_001342676.1.
DR RefSeq; NP_001332237.1; NM_001342677.1.
DR RefSeq; NP_001332238.1; NM_001342674.1.
DR RefSeq; NP_001332239.1; NM_001342675.1.
DR RefSeq; NP_195906.1; NM_120364.1.
DR AlphaFoldDB; Q9LYZ9; -.
DR SMR; Q9LYZ9; -.
DR STRING; 3702.AT5G02860.1; -.
DR PaxDb; Q9LYZ9; -.
DR PRIDE; Q9LYZ9; -.
DR ProteomicsDB; 249000; -.
DR EnsemblPlants; AT5G02860.1; AT5G02860.1; AT5G02860.
DR EnsemblPlants; AT5G02860.2; AT5G02860.2; AT5G02860.
DR EnsemblPlants; AT5G02860.3; AT5G02860.3; AT5G02860.
DR EnsemblPlants; AT5G02860.4; AT5G02860.4; AT5G02860.
DR EnsemblPlants; AT5G02860.5; AT5G02860.5; AT5G02860.
DR GeneID; 831761; -.
DR Gramene; AT5G02860.1; AT5G02860.1; AT5G02860.
DR Gramene; AT5G02860.2; AT5G02860.2; AT5G02860.
DR Gramene; AT5G02860.3; AT5G02860.3; AT5G02860.
DR Gramene; AT5G02860.4; AT5G02860.4; AT5G02860.
DR Gramene; AT5G02860.5; AT5G02860.5; AT5G02860.
DR KEGG; ath:AT5G02860; -.
DR Araport; AT5G02860; -.
DR TAIR; locus:2151281; AT5G02860.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_8_1; -.
DR InParanoid; Q9LYZ9; -.
DR OMA; TVIYAYG; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LYZ9; -.
DR PRO; PR:Q9LYZ9; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LYZ9; baseline and differential.
DR Genevisible; Q9LYZ9; AT.
DR Gene3D; 1.25.40.10; -; 7.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 3.
DR Pfam; PF13812; PPR_3; 3.
DR TIGRFAMs; TIGR00756; PPR; 15.
DR PROSITE; PS51375; PPR; 18.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..819
FT /note="Pentatricopeptide repeat-containing protein
FT At5g02860"
FT /id="PRO_0000363499"
FT REPEAT 172..206
FT /note="PPR 1"
FT REPEAT 207..241
FT /note="PPR 2"
FT REPEAT 242..277
FT /note="PPR 3"
FT REPEAT 278..312
FT /note="PPR 4"
FT REPEAT 313..347
FT /note="PPR 5"
FT REPEAT 348..382
FT /note="PPR 6"
FT REPEAT 383..417
FT /note="PPR 7"
FT REPEAT 418..452
FT /note="PPR 8"
FT REPEAT 453..487
FT /note="PPR 9"
FT REPEAT 488..522
FT /note="PPR 10"
FT REPEAT 523..557
FT /note="PPR 11"
FT REPEAT 558..592
FT /note="PPR 12"
FT REPEAT 593..627
FT /note="PPR 13"
FT REPEAT 628..662
FT /note="PPR 14"
FT REPEAT 663..697
FT /note="PPR 15"
FT REPEAT 698..732
FT /note="PPR 16"
FT REPEAT 733..767
FT /note="PPR 17"
FT REPEAT 768..802
FT /note="PPR 18"
FT REGION 57..93
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 57..74
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 819 AA; 92083 MW; 7EE1971B72EC0EFE CRC64;
MADKLALPLL LPCTPSSKPY SHDQNHHISR TPFLTTSLSS PPPPPVEPLL HDVFLHQNPN
SRQPISSQTS RNRNRTRIGK SRDPNLGKPW SYHGLSPQGQ QVLRSLIEPN FDSGQLDSVL
SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII
SMLGKEGRVS SAANMFNGLQ EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK
PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA
RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV ESAMSIFEEM RNAGCKPNIC
TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM
KRAGFVPERE TFNTLISAYS RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW
EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF
TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII SYNTVIYAYC RNTRMRDASR
IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC
KLNRKDEAKL FVEDLRNLDP HAPKGEDLRL LERIVKKWP
