ID   PP367_ARATH             Reviewed;         622 AA.
AC   Q9FG16;
DT   10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT   01-MAR-2001, sequence version 1.
DT   03-AUG-2022, entry version 114.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At5g06540;
GN   Name=PCMP-H88; OrderedLocusNames=At5g06540; ORFNames=F15M7.7;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RA   Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H.,
RA   Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 5. XI.";
RL   Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AP002543; BAB11403.1; -; Genomic_DNA.
DR   EMBL; CP002688; AED91032.1; -; Genomic_DNA.
DR   RefSeq; NP_196272.1; NM_120737.2.
DR   AlphaFoldDB; Q9FG16; -.
DR   SMR; Q9FG16; -.
DR   STRING; 3702.AT5G06540.1; -.
DR   PaxDb; Q9FG16; -.
DR   PRIDE; Q9FG16; -.
DR   ProteomicsDB; 249257; -.
DR   EnsemblPlants; AT5G06540.1; AT5G06540.1; AT5G06540.
DR   GeneID; 830542; -.
DR   Gramene; AT5G06540.1; AT5G06540.1; AT5G06540.
DR   KEGG; ath:AT5G06540; -.
DR   Araport; AT5G06540; -.
DR   TAIR; locus:2144143; AT5G06540.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_15_10_1; -.
DR   InParanoid; Q9FG16; -.
DR   OMA; AYGIMKI; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q9FG16; -.
DR   PRO; PR:Q9FG16; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q9FG16; baseline and differential.
DR   Genevisible; Q9FG16; AT.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   Gene3D; 1.25.40.10; -; 3.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF01535; PPR; 6.
DR   TIGRFAMs; TIGR00756; PPR; 4.
DR   PROSITE; PS51375; PPR; 11.
PE   3: Inferred from homology;
KW   Reference proteome; Repeat.
FT   CHAIN           1..622
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At5g06540"
FT                   /id="PRO_0000363504"
FT   REPEAT          81..115
FT                   /note="PPR 1"
FT   REPEAT          116..150
FT                   /note="PPR 2"
FT   REPEAT          151..181
FT                   /note="PPR 3"
FT   REPEAT          182..212
FT                   /note="PPR 4"
FT   REPEAT          213..247
FT                   /note="PPR 5"
FT   REPEAT          248..282
FT                   /note="PPR 6"
FT   REPEAT          283..313
FT                   /note="PPR 7"
FT   REPEAT          314..348
FT                   /note="PPR 8"
FT   REPEAT          349..384
FT                   /note="PPR 9"
FT   REPEAT          385..419
FT                   /note="PPR 10"
FT   REGION          420..495
FT                   /note="Type E motif"
FT   REGION          496..527
FT                   /note="Type E(+) motif"
FT   REGION          528..622
FT                   /note="Type DYW motif"
SQ   SEQUENCE   622 AA;  70495 MW;  E4B041D104710727 CRC64;
     MSNIVLNTLR FKHPKLALLQ SCSSFSDLKI IHGFLLRTHL ISDVFVASRL LALCVDDSTF
     NKPTNLLGYA YGIFSQIQNP NLFVFNLLIR CFSTGAEPSK AFGFYTQMLK SRIWPDNITF
     PFLIKASSEM ECVLVGEQTH SQIVRFGFQN DVYVENSLVH MYANCGFIAA AGRIFGQMGF
     RDVVSWTSMV AGYCKCGMVE NAREMFDEMP HRNLFTWSIM INGYAKNNCF EKAIDLFEFM
     KREGVVANET VMVSVISSCA HLGALEFGER AYEYVVKSHM TVNLILGTAL VDMFWRCGDI
     EKAIHVFEGL PETDSLSWSS IIKGLAVHGH AHKAMHYFSQ MISLGFIPRD VTFTAVLSAC
     SHGGLVEKGL EIYENMKKDH GIEPRLEHYG CIVDMLGRAG KLAEAENFIL KMHVKPNAPI
     LGALLGACKI YKNTEVAERV GNMLIKVKPE HSGYYVLLSN IYACAGQWDK IESLRDMMKE
     KLVKKPPGWS LIEIDGKINK FTMGDDQKHP EMGKIRRKWE EILGKIRLIG YKGNTGDAFF
     DVDEEEKESS IHMHSEKLAI AYGMMKTKPG TTIRIVKNLR VCEDCHTVTK LISEVYGREL
     IVRDRNRFHH FRNGVCSCRD YW