PP370_ARATH
ID PP370_ARATH Reviewed; 849 AA.
AC Q9FNN9;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At5g08490;
GN Name=PCMP-E32; OrderedLocusNames=At5g08490; ORFNames=F8L15.18;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9405937; DOI=10.1093/dnares/4.4.291;
RA Kotani H., Nakamura Y., Sato S., Kaneko T., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence
RT features of the regions of 1,044,062 bp covered by thirteen physically
RT assigned P1 clones.";
RL DNA Res. 4:291-300(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB006697; BAB09998.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91310.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70124.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70126.1; -; Genomic_DNA.
DR RefSeq; NP_001318512.1; NM_001343008.1.
DR RefSeq; NP_001331757.1; NM_001343010.1.
DR RefSeq; NP_196466.1; NM_120934.2.
DR AlphaFoldDB; Q9FNN9; -.
DR SMR; Q9FNN9; -.
DR STRING; 3702.AT5G08490.1; -.
DR PaxDb; Q9FNN9; -.
DR PRIDE; Q9FNN9; -.
DR EnsemblPlants; AT5G08490.1; AT5G08490.1; AT5G08490.
DR EnsemblPlants; AT5G08490.3; AT5G08490.3; AT5G08490.
DR EnsemblPlants; AT5G08490.8; AT5G08490.8; AT5G08490.
DR GeneID; 830748; -.
DR Gramene; AT5G08490.1; AT5G08490.1; AT5G08490.
DR Gramene; AT5G08490.3; AT5G08490.3; AT5G08490.
DR Gramene; AT5G08490.8; AT5G08490.8; AT5G08490.
DR KEGG; ath:AT5G08490; -.
DR Araport; AT5G08490; -.
DR TAIR; locus:2159582; AT5G08490.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_7_1; -.
DR InParanoid; Q9FNN9; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FNN9; -.
DR PRO; PR:Q9FNN9; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FNN9; baseline and differential.
DR Genevisible; Q9FNN9; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0080156; P:mitochondrial mRNA modification; IMP:TAIR.
DR GO; GO:0009737; P:response to abscisic acid; IMP:TAIR.
DR GO; GO:0009414; P:response to water deprivation; IMP:TAIR.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 3.
DR Pfam; PF01535; PPR; 8.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 17.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..849
FT /note="Putative pentatricopeptide repeat-containing protein
FT At5g08490"
FT /id="PRO_0000363507"
FT REPEAT 20..54
FT /note="PPR 1"
FT REPEAT 55..89
FT /note="PPR 2"
FT REPEAT 121..155
FT /note="PPR 3"
FT REPEAT 156..187
FT /note="PPR 4"
FT REPEAT 188..222
FT /note="PPR 5"
FT REPEAT 223..260
FT /note="PPR 6"
FT REPEAT 262..296
FT /note="PPR 7"
FT REPEAT 297..327
FT /note="PPR 8"
FT REPEAT 329..363
FT /note="PPR 9"
FT REPEAT 365..399
FT /note="PPR 10"
FT REPEAT 400..430
FT /note="PPR 11"
FT REPEAT 431..465
FT /note="PPR 12"
FT REPEAT 469..499
FT /note="PPR 13"
FT REPEAT 501..531
FT /note="PPR 14"
FT REPEAT 532..566
FT /note="PPR 15"
FT REPEAT 567..597
FT /note="PPR 16"
FT REPEAT 601..631
FT /note="PPR 17"
FT REPEAT 632..666
FT /note="PPR 18"
FT REPEAT 667..702
FT /note="PPR 19"
FT REPEAT 703..733
FT /note="PPR 20"
FT REGION 738..813
FT /note="Type E motif"
FT REGION 814..844
FT /note="Type E(+) motif"
SQ SEQUENCE 849 AA; 94488 MW; BE4191399A16E1A4 CRC64;
MGPLRQFVQN FRLLSGFGTD HRVFLDVVKA CASVSDLTSG RALHGCVFKL GHIACSEVSK
SVLNMYAKCR RMDDCQKMFR QMDSLDPVVW NIVLTGLSVS CGRETMRFFK AMHFADEPKP
SSVTFAIVLP LCVRLGDSYN GKSMHSYIIK AGLEKDTLVG NALVSMYAKF GFIFPDAYTA
FDGIADKDVV SWNAIIAGFS ENNMMADAFR SFCLMLKEPT EPNYATIANV LPVCASMDKN
IACRSGRQIH SYVVQRSWLQ THVFVCNSLV SFYLRVGRIE EAASLFTRMG SKDLVSWNVV
IAGYASNCEW FKAFQLFHNL VHKGDVSPDS VTIISILPVC AQLTDLASGK EIHSYILRHS
YLLEDTSVGN ALISFYARFG DTSAAYWAFS LMSTKDIISW NAILDAFADS PKQFQFLNLL
HHLLNEAITL DSVTILSLLK FCINVQGIGK VKEVHGYSVK AGLLHDEEEP KLGNALLDAY
AKCGNVEYAH KIFLGLSERR TLVSYNSLLS GYVNSGSHDD AQMLFTEMST TDLTTWSLMV
RIYAESCCPN EAIGVFREIQ ARGMRPNTVT IMNLLPVCAQ LASLHLVRQC HGYIIRGGLG
DIRLKGTLLD VYAKCGSLKH AYSVFQSDAR RDLVMFTAMV AGYAVHGRGK EALMIYSHMT
ESNIKPDHVF ITTMLTACCH AGLIQDGLQI YDSIRTVHGM KPTMEQYACA VDLIARGGRL
DDAYSFVTQM PVEPNANIWG TLLRACTTYN RMDLGHSVAN HLLQAESDDT GNHVLISNMY
AADAKWEGVM ELRNLMKKKE MKKPAGCSWL EVDGQRNVFV SGDCSHPRRD SIFDLVNALY
LQMKEPVVF
