ATB52_ARATH
ID ATB52_ARATH Reviewed; 156 AA.
AC Q9FN29;
DT 31-OCT-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 138.
DE RecName: Full=Homeobox-leucine zipper protein ATHB-52;
DE AltName: Full=HD-ZIP protein ATHB-52;
DE AltName: Full=Homeodomain transcription factor ATHB-52;
GN Name=ATHB-52; OrderedLocusNames=At5g53980; ORFNames=K19P17.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9501997; DOI=10.1093/dnares/4.6.401;
RA Nakamura Y., Sato S., Kaneko T., Kotani H., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence
RT features of the regions of 1,191,918 bp covered by seventeen physically
RT assigned P1 clones.";
RL DNA Res. 4:401-414(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Kim C.J., Chen H., Cheuk R.F., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY, AND TISSUE SPECIFICITY.
RX PubMed=16055682; DOI=10.1104/pp.105.063461;
RA Henriksson E., Olsson A.S.B., Johannesson H., Johansson H., Hanson J.,
RA Engstroem P., Soederman E.;
RT "Homeodomain leucine zipper class I genes in Arabidopsis. Expression
RT patterns and phylogenetic relationships.";
RL Plant Physiol. 139:509-518(2005).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in roots and flowers.
CC {ECO:0000269|PubMed:16055682}.
CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class I subfamily.
CC {ECO:0000305}.
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DR EMBL; AB007644; BAB10728.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96435.1; -; Genomic_DNA.
DR EMBL; BT015927; AAV31157.1; -; mRNA.
DR EMBL; BT021920; AAX49369.1; -; mRNA.
DR EMBL; AK229211; BAF01080.1; -; mRNA.
DR RefSeq; NP_200209.1; NM_124777.5.
DR AlphaFoldDB; Q9FN29; -.
DR SMR; Q9FN29; -.
DR STRING; 3702.AT5G53980.1; -.
DR PaxDb; Q9FN29; -.
DR PRIDE; Q9FN29; -.
DR EnsemblPlants; AT5G53980.1; AT5G53980.1; AT5G53980.
DR GeneID; 835481; -.
DR Gramene; AT5G53980.1; AT5G53980.1; AT5G53980.
DR KEGG; ath:AT5G53980; -.
DR Araport; AT5G53980; -.
DR TAIR; locus:2154724; AT5G53980.
DR eggNOG; KOG0483; Eukaryota.
DR HOGENOM; CLU_1550312_0_0_1; -.
DR InParanoid; Q9FN29; -.
DR OMA; DELYACF; -.
DR OrthoDB; 1307138at2759; -.
DR PhylomeDB; Q9FN29; -.
DR PRO; PR:Q9FN29; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FN29; baseline and differential.
DR Genevisible; Q9FN29; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IBA:GO_Central.
DR GO; GO:0009646; P:response to absence of light; IEP:TAIR.
DR GO; GO:0009637; P:response to blue light; IEP:TAIR.
DR CDD; cd00086; homeodomain; 1.
DR InterPro; IPR045224; HDZip_class_I_plant.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017970; Homeobox_CS.
DR InterPro; IPR001356; Homeobox_dom.
DR PANTHER; PTHR24326; PTHR24326; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR SMART; SM00389; HOX; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS00027; HOMEOBOX_1; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Homeobox; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..156
FT /note="Homeobox-leucine zipper protein ATHB-52"
FT /id="PRO_0000257803"
FT DNA_BIND 8..67
FT /note="Homeobox"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 68..96
FT /note="Leucine-zipper"
SQ SEQUENCE 156 AA; 17934 MW; CBE774C023FFEFD7 CRC64;
MENSQSQGKN KKKRLTQDQV RQLEKCFTMN KKLEPDLKLQ LSNQLGLPQR QVAVWFQNKR
ARFKTQSLEV QHCTLQSKHE AALSDKAKLE HQVQFLQDEL KRARNQLALF TNQDSPVDNS
NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV
