PP371_ARATH
ID PP371_ARATH Reviewed; 511 AA.
AC Q9FNN7; Q0WVT9;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g08510;
GN Name=PCMP-E20; OrderedLocusNames=At5g08510; ORFNames=F8L15.21;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9405937; DOI=10.1093/dnares/4.4.291;
RA Kotani H., Nakamura Y., Sato S., Kaneko T., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence
RT features of the regions of 1,044,062 bp covered by thirteen physically
RT assigned P1 clones.";
RL DNA Res. 4:291-300(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (AUG-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 8-511.
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [6]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB006697; BAB10000.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91313.1; -; Genomic_DNA.
DR EMBL; BT015162; AAT85758.1; -; mRNA.
DR EMBL; AK226649; BAE98759.1; -; mRNA.
DR RefSeq; NP_196468.1; NM_120936.4.
DR AlphaFoldDB; Q9FNN7; -.
DR SMR; Q9FNN7; -.
DR BioGRID; 16028; 1.
DR STRING; 3702.AT5G08510.1; -.
DR PaxDb; Q9FNN7; -.
DR PRIDE; Q9FNN7; -.
DR ProteomicsDB; 249261; -.
DR EnsemblPlants; AT5G08510.1; AT5G08510.1; AT5G08510.
DR GeneID; 830750; -.
DR Gramene; AT5G08510.1; AT5G08510.1; AT5G08510.
DR KEGG; ath:AT5G08510; -.
DR Araport; AT5G08510; -.
DR TAIR; locus:2159602; AT5G08510.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_2_1; -.
DR InParanoid; Q9FNN7; -.
DR OMA; YTLRNGI; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FNN7; -.
DR PRO; PR:Q9FNN7; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FNN7; baseline and differential.
DR Genevisible; Q9FNN7; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 2.
DR Pfam; PF13812; PPR_3; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 11.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..511
FT /note="Pentatricopeptide repeat-containing protein
FT At5g08510"
FT /id="PRO_0000363508"
FT REPEAT 46..80
FT /note="PPR 1"
FT REPEAT 81..115
FT /note="PPR 2"
FT REPEAT 116..146
FT /note="PPR 3"
FT REPEAT 147..181
FT /note="PPR 4"
FT REPEAT 182..213
FT /note="PPR 5"
FT REPEAT 214..248
FT /note="PPR 6"
FT REPEAT 249..279
FT /note="PPR 7"
FT REPEAT 281..315
FT /note="PPR 8"
FT REPEAT 316..346
FT /note="PPR 9"
FT REPEAT 352..382
FT /note="PPR 10"
FT REGION 387..462
FT /note="Type E motif"
FT REGION 463..494
FT /note="Type E(+) motif"
FT CONFLICT 8..11
FT /note="HAHC -> PPPG (in Ref. 4; BAE98759)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 511 AA; 58038 MW; C54BE3131CF4CFC9 CRC64;
MNGIKQLHAH CLRTGVDETK DLLQRLLLIP NLVYARKLFD HHQNSCTFLY NKLIQAYYVH
HQPHESIVLY NLLSFDGLRP SHHTFNFIFA ASASFSSARP LRLLHSQFFR SGFESDSFCC
TTLITAYAKL GALCCARRVF DEMSKRDVPV WNAMITGYQR RGDMKAAMEL FDSMPRKNVT
SWTTVISGFS QNGNYSEALK MFLCMEKDKS VKPNHITVVS VLPACANLGE LEIGRRLEGY
ARENGFFDNI YVCNATIEMY SKCGMIDVAK RLFEELGNQR NLCSWNSMIG SLATHGKHDE
ALTLFAQMLR EGEKPDAVTF VGLLLACVHG GMVVKGQELF KSMEEVHKIS PKLEHYGCMI
DLLGRVGKLQ EAYDLIKTMP MKPDAVVWGT LLGACSFHGN VEIAEIASEA LFKLEPTNPG
NCVIMSNIYA ANEKWDGVLR MRKLMKKETM TKAAGYSYFV EVGVDVHKFT VEDKSHPRSY
EIYQVLEEIF RRMKLEKSRF DSLLQPEQLC I
