PP373_ARATH
ID PP373_ARATH Reviewed; 995 AA.
AC Q9FIB2;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At5g09950;
GN Name=PCMP-H35; OrderedLocusNames=At5g09950; ORFNames=MYH9.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10048488; DOI=10.1093/dnares/5.6.379;
RA Asamizu E., Sato S., Kaneko T., Nakamura Y., Kotani H., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence
RT features of the regions of 1,081,958 bp covered by seventeen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:379-391(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB016893; BAB09416.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91470.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM69269.1; -; Genomic_DNA.
DR RefSeq; NP_001318522.1; NM_001343079.1.
DR RefSeq; NP_196557.1; NM_121032.1.
DR AlphaFoldDB; Q9FIB2; -.
DR SMR; Q9FIB2; -.
DR STRING; 3702.AT5G09950.1; -.
DR PaxDb; Q9FIB2; -.
DR PRIDE; Q9FIB2; -.
DR ProteomicsDB; 249002; -.
DR EnsemblPlants; AT5G09950.1; AT5G09950.1; AT5G09950.
DR EnsemblPlants; AT5G09950.3; AT5G09950.3; AT5G09950.
DR GeneID; 830856; -.
DR Gramene; AT5G09950.1; AT5G09950.1; AT5G09950.
DR Gramene; AT5G09950.3; AT5G09950.3; AT5G09950.
DR KEGG; ath:AT5G09950; -.
DR Araport; AT5G09950; -.
DR TAIR; locus:2178188; AT5G09950.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_0_1; -.
DR InParanoid; Q9FIB2; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FIB2; -.
DR PRO; PR:Q9FIB2; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FIB2; baseline and differential.
DR Genevisible; Q9FIB2; AT.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 9.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 17.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..995
FT /note="Putative pentatricopeptide repeat-containing protein
FT At5g09950"
FT /id="PRO_0000363510"
FT REPEAT 35..65
FT /note="PPR 1"
FT REPEAT 66..100
FT /note="PPR 2"
FT REPEAT 101..137
FT /note="PPR 3"
FT REPEAT 138..169
FT /note="PPR 4"
FT REPEAT 170..204
FT /note="PPR 5"
FT REPEAT 205..241
FT /note="PPR 6"
FT REPEAT 242..276
FT /note="PPR 7"
FT REPEAT 278..303
FT /note="PPR 8"
FT REPEAT 307..342
FT /note="PPR 9"
FT REPEAT 348..378
FT /note="PPR 10"
FT REPEAT 379..413
FT /note="PPR 11"
FT REPEAT 414..448
FT /note="PPR 12"
FT REPEAT 449..483
FT /note="PPR 13"
FT REPEAT 484..515
FT /note="PPR 14"
FT REPEAT 516..550
FT /note="PPR 15"
FT REPEAT 551..581
FT /note="PPR 16"
FT REPEAT 583..617
FT /note="PPR 17"
FT REPEAT 618..652
FT /note="PPR 18"
FT REPEAT 653..683
FT /note="PPR 19"
FT REPEAT 684..718
FT /note="PPR 20"
FT REPEAT 720..750
FT /note="PPR 21"
FT REPEAT 756..786
FT /note="PPR 22"
FT REGION 791..868
FT /note="Type E motif"
FT REGION 869..899
FT /note="Type E(+) motif"
FT REGION 900..995
FT /note="Type DYW motif"
SQ SEQUENCE 995 AA; 110775 MW; 261C776216BF5AC2 CRC64;
MTNCVPLSFV QSCVGHRGAA RFFHSRLYKN RLDKDVYLCN NLINAYLETG DSVSARKVFD
EMPLRNCVSW ACIVSGYSRN GEHKEALVFL RDMVKEGIFS NQYAFVSVLR ACQEIGSVGI
LFGRQIHGLM FKLSYAVDAV VSNVLISMYW KCIGSVGYAL CAFGDIEVKN SVSWNSIISV
YSQAGDQRSA FRIFSSMQYD GSRPTEYTFG SLVTTACSLT EPDVRLLEQI MCTIQKSGLL
TDLFVGSGLV SAFAKSGSLS YARKVFNQME TRNAVTLNGL MVGLVRQKWG EEATKLFMDM
NSMIDVSPES YVILLSSFPE YSLAEEVGLK KGREVHGHVI TTGLVDFMVG IGNGLVNMYA
KCGSIADARR VFYFMTDKDS VSWNSMITGL DQNGCFIEAV ERYKSMRRHD ILPGSFTLIS
SLSSCASLKW AKLGQQIHGE SLKLGIDLNV SVSNALMTLY AETGYLNECR KIFSSMPEHD
QVSWNSIIGA LARSERSLPE AVVCFLNAQR AGQKLNRITF SSVLSAVSSL SFGELGKQIH
GLALKNNIAD EATTENALIA CYGKCGEMDG CEKIFSRMAE RRDNVTWNSM ISGYIHNELL
AKALDLVWFM LQTGQRLDSF MYATVLSAFA SVATLERGME VHACSVRACL ESDVVVGSAL
VDMYSKCGRL DYALRFFNTM PVRNSYSWNS MISGYARHGQ GEEALKLFET MKLDGQTPPD
HVTFVGVLSA CSHAGLLEEG FKHFESMSDS YGLAPRIEHF SCMADVLGRA GELDKLEDFI
EKMPMKPNVL IWRTVLGACC RANGRKAELG KKAAEMLFQL EPENAVNYVL LGNMYAAGGR
WEDLVKARKK MKDADVKKEA GYSWVTMKDG VHMFVAGDKS HPDADVIYKK LKELNRKMRD
AGYVPQTGFA LYDLEQENKE EILSYHSEKL AVAFVLAAQR SSTLPIRIMK NLRVCGDCHS
AFKYISKIEG RQIILRDSNR FHHFQDGACS CSDFW
