PP374_ARATH
ID PP374_ARATH Reviewed; 580 AA.
AC Q8VYD6; Q8LCN2; Q9FT63;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2002, sequence version 1.
DT 25-MAY-2022, entry version 114.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g10690;
DE AltName: Full=CBS domain-containing protein CBSPPR1;
GN Name=CBSPPR1; OrderedLocusNames=At5g10690; ORFNames=MAJ23.50;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=19400948; DOI=10.1186/1471-2164-10-200;
RA Kushwaha H.R., Singh A.K., Sopory S.K., Singla-Pareek S.L., Pareek A.;
RT "Genome wide expression analysis of CBS domain containing proteins in
RT Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their
RT developmental and stress regulation.";
RL BMC Genomics 10:200-200(2009).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAC08243.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL392144; CAC08243.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED91581.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70888.1; -; Genomic_DNA.
DR EMBL; AY072152; AAL59974.1; -; mRNA.
DR EMBL; AY096408; AAM20048.1; -; mRNA.
DR EMBL; AY086499; AAM63500.1; -; mRNA.
DR RefSeq; NP_001332464.1; NM_001343131.1.
DR RefSeq; NP_568233.1; NM_121106.4.
DR AlphaFoldDB; Q8VYD6; -.
DR SMR; Q8VYD6; -.
DR STRING; 3702.AT5G10690.1; -.
DR PaxDb; Q8VYD6; -.
DR PRIDE; Q8VYD6; -.
DR ProteomicsDB; 249003; -.
DR EnsemblPlants; AT5G10690.1; AT5G10690.1; AT5G10690.
DR EnsemblPlants; AT5G10690.2; AT5G10690.2; AT5G10690.
DR GeneID; 830933; -.
DR Gramene; AT5G10690.1; AT5G10690.1; AT5G10690.
DR Gramene; AT5G10690.2; AT5G10690.2; AT5G10690.
DR KEGG; ath:AT5G10690; -.
DR Araport; AT5G10690; -.
DR TAIR; locus:2159654; AT5G10690.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_027035_0_0_1; -.
DR InParanoid; Q8VYD6; -.
DR OMA; FDEMSKP; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q8VYD6; -.
DR PRO; PR:Q8VYD6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q8VYD6; baseline and differential.
DR Genevisible; Q8VYD6; AT.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR Gene3D; 1.25.40.10; -; 3.
DR Gene3D; 3.10.580.10; -; 1.
DR InterPro; IPR044781; At5g10690-like.
DR InterPro; IPR000644; CBS_dom.
DR InterPro; IPR046342; CBS_dom_sf.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR47581; PTHR47581; 1.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF54631; SSF54631; 1.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51371; CBS; 1.
DR PROSITE; PS51375; PPR; 7.
PE 2: Evidence at transcript level;
KW CBS domain; Reference proteome; Repeat.
FT CHAIN 1..580
FT /note="Pentatricopeptide repeat-containing protein
FT At5g10690"
FT /id="PRO_0000363511"
FT REPEAT 76..110
FT /note="PPR 1"
FT REPEAT 112..142
FT /note="PPR 2"
FT REPEAT 151..181
FT /note="PPR 3"
FT REPEAT 189..223
FT /note="PPR 4"
FT REPEAT 224..254
FT /note="PPR 5"
FT REPEAT 266..296
FT /note="PPR 6"
FT REPEAT 302..337
FT /note="PPR 7"
FT REPEAT 342..376
FT /note="PPR 8"
FT REPEAT 382..417
FT /note="PPR 9"
FT DOMAIN 486..553
FT /note="CBS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00703"
FT CONFLICT 92
FT /note="N -> K (in Ref. 4; AAM63500)"
FT /evidence="ECO:0000305"
FT CONFLICT 147
FT /note="T -> N (in Ref. 4; AAM63500)"
FT /evidence="ECO:0000305"
FT CONFLICT 539
FT /note="K -> N (in Ref. 4; AAM63500)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 580 AA; 64491 MW; AE0C31984EC48ECF CRC64;
MNRISAISTL VTPLPLLPSC SFVPTRRCYP RRATPYSRRI NLKPLTSRIV LLTRRRQLGQ
IVEEVEAAKK RYGRLNTIVM NSVLEACVHC GNIDLALRMF HEMAEPGGIG VDSISYATIL
KGLGKARRID EAFQMLETIE YGTAAGTPKL SSSLIYGLLD ALINAGDLRR ANGLLARYDI
LLLDHGTPSV LIYNLLMKGY VNSESPQAAI NLLDEMLRLR LEPDRLTYNT LIHACIKCGD
LDAAMKFFND MKEKAEEYYD DFLQPDVVTY TTLVKGFGDA TDLLSLQEIF LEMKLCENVF
IDRTAFTAVV DAMLKCGSTS GALCVFGEIL KRSGANEVLR PKPHLYLSMM RAFAVQGDYG
MVRNLYLRLW PDSSGSISKA VQQEADNLLM EAALNDGQLD EALGILLSIV RRWKTIPWTT
SGGMAAVRLE TLLGFSKSIL RPHLLSKVIP SEPIESIMIR FEATRPLLGT LQLKNVAMRF
FKEQVVPIVD DRGSCIGLLH REDCNNLDAP LVSMMRSPPT CVSTTTSIGR VVDLVLEKKL
KMVIVVHCGN FSGSGYSSKA VGAFTRAQLY RLFESEQKLL
