PP375_ARATH
ID PP375_ARATH Reviewed; 602 AA.
AC Q9LFM6;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 103.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g11310, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At5g11310; ORFNames=F2I11_200;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL360314; CAB96666.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91658.1; -; Genomic_DNA.
DR EMBL; AK229100; BAF00978.1; -; mRNA.
DR RefSeq; NP_196692.1; NM_121169.5.
DR AlphaFoldDB; Q9LFM6; -.
DR SMR; Q9LFM6; -.
DR STRING; 3702.AT5G11310.1; -.
DR PaxDb; Q9LFM6; -.
DR PRIDE; Q9LFM6; -.
DR ProteomicsDB; 249004; -.
DR EnsemblPlants; AT5G11310.1; AT5G11310.1; AT5G11310.
DR GeneID; 831002; -.
DR Gramene; AT5G11310.1; AT5G11310.1; AT5G11310.
DR KEGG; ath:AT5G11310; -.
DR Araport; AT5G11310; -.
DR TAIR; locus:2147947; AT5G11310.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_20_1; -.
DR InParanoid; Q9LFM6; -.
DR OMA; PSIRVYN; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LFM6; -.
DR PRO; PR:Q9LFM6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LFM6; baseline and differential.
DR Genevisible; Q9LFM6; AT.
DR GO; GO:0005829; C:cytosol; IDA:TAIR.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0009788; P:negative regulation of abscisic acid-activated signaling pathway; IMP:TAIR.
DR GO; GO:0010029; P:regulation of seed germination; IMP:TAIR.
DR GO; GO:0009845; P:seed germination; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..35
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 36..602
FT /note="Pentatricopeptide repeat-containing protein
FT At5g11310, mitochondrial"
FT /id="PRO_0000363512"
FT REPEAT 134..165
FT /note="PPR 1"
FT REPEAT 172..202
FT /note="PPR 2"
FT REPEAT 211..241
FT /note="PPR 3"
FT REPEAT 249..283
FT /note="PPR 4"
FT REPEAT 284..318
FT /note="PPR 5"
FT REPEAT 319..353
FT /note="PPR 6"
FT REPEAT 354..388
FT /note="PPR 7"
FT REPEAT 389..423
FT /note="PPR 8"
FT REPEAT 424..458
FT /note="PPR 9"
FT REPEAT 459..493
FT /note="PPR 10"
FT REPEAT 494..528
FT /note="PPR 11"
SQ SEQUENCE 602 AA; 68337 MW; 18488CB0319F5178 CRC64;
MNSLFTAFRR NLLLNPNPHR NFFLHRLLSS SRRSSPLIPV EPLIQRIQSP AVPDSTCTPP
QQNTVSKTDL STISNLLENT DVVPGSSLES ALDETGIEPS VELVHALFDR LSSSPMLLHS
VFKWAEMKPG FTLSPSLFDS VVNSLCKARE FEIAWSLVFD RVRSDEGSNL VSADTFIVLI
RRYARAGMVQ QAIRAFEFAR SYEPVCKSAT ELRLLEVLLD ALCKEGHVRE ASMYLERIGG
TMDSNWVPSV RIFNILLNGW FRSRKLKQAE KLWEEMKAMN VKPTVVTYGT LIEGYCRMRR
VQIAMEVLEE MKMAEMEINF MVFNPIIDGL GEAGRLSEAL GMMERFFVCE SGPTIVTYNS
LVKNFCKAGD LPGASKILKM MMTRGVDPTT TTYNHFFKYF SKHNKTEEGM NLYFKLIEAG
HSPDRLTYHL ILKMLCEDGK LSLAMQVNKE MKNRGIDPDL LTTTMLIHLL CRLEMLEEAF
EEFDNAVRRG IIPQYITFKM IDNGLRSKGM SDMAKRLSSL MSSLPHSKKL PNTYREAVDA
PPDKDRRKSI LHRAEAMSDV LKGCRNPRKL VKMRGSHKKA VGEDINLIDD INERNGDAGD
FE
