PP376_ARATH
ID PP376_ARATH Reviewed; 816 AA.
AC Q9FMQ1;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 113.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g12100, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At5g12100; ORFNames=MXC9.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9501997; DOI=10.1093/dnares/4.6.401;
RA Nakamura Y., Sato S., Kaneko T., Kotani H., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence
RT features of the regions of 1,191,918 bp covered by seventeen physically
RT assigned P1 clones.";
RL DNA Res. 4:401-414(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB007727; BAB10028.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91763.1; -; Genomic_DNA.
DR EMBL; BT005769; AAO64173.1; -; mRNA.
DR EMBL; BT006094; AAP04079.1; -; mRNA.
DR EMBL; AK228623; BAF00534.1; -; mRNA.
DR RefSeq; NP_196771.1; NM_121248.5.
DR AlphaFoldDB; Q9FMQ1; -.
DR SMR; Q9FMQ1; -.
DR STRING; 3702.AT5G12100.1; -.
DR PaxDb; Q9FMQ1; -.
DR PRIDE; Q9FMQ1; -.
DR ProteomicsDB; 249005; -.
DR EnsemblPlants; AT5G12100.1; AT5G12100.1; AT5G12100.
DR GeneID; 831083; -.
DR Gramene; AT5G12100.1; AT5G12100.1; AT5G12100.
DR KEGG; ath:AT5G12100; -.
DR Araport; AT5G12100; -.
DR TAIR; locus:2177028; AT5G12100.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_2_1; -.
DR InParanoid; Q9FMQ1; -.
DR OMA; PKADTYN; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FMQ1; -.
DR PRO; PR:Q9FMQ1; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FMQ1; baseline and differential.
DR Genevisible; Q9FMQ1; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0008270; F:zinc ion binding; HDA:TAIR.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 3.
DR Pfam; PF13041; PPR_2; 6.
DR TIGRFAMs; TIGR00756; PPR; 12.
DR PROSITE; PS51375; PPR; 19.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..39
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 40..816
FT /note="Pentatricopeptide repeat-containing protein
FT At5g12100, mitochondrial"
FT /id="PRO_0000363513"
FT REPEAT 108..142
FT /note="PPR 1"
FT REPEAT 143..177
FT /note="PPR 2"
FT REPEAT 178..212
FT /note="PPR 3"
FT REPEAT 213..247
FT /note="PPR 4"
FT REPEAT 248..282
FT /note="PPR 5"
FT REPEAT 283..317
FT /note="PPR 6"
FT REPEAT 318..352
FT /note="PPR 7"
FT REPEAT 353..387
FT /note="PPR 8"
FT REPEAT 388..422
FT /note="PPR 9"
FT REPEAT 423..457
FT /note="PPR 10"
FT REPEAT 458..492
FT /note="PPR 11"
FT REPEAT 493..527
FT /note="PPR 12"
FT REPEAT 528..562
FT /note="PPR 13"
FT REPEAT 563..597
FT /note="PPR 14"
FT REPEAT 598..632
FT /note="PPR 15"
FT REPEAT 633..662
FT /note="PPR 16"
FT REPEAT 664..698
FT /note="PPR 17"
FT REPEAT 699..733
FT /note="PPR 18"
FT REPEAT 734..768
FT /note="PPR 19"
FT REPEAT 769..803
FT /note="PPR 20"
FT REGION 34..57
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 816 AA; 91918 MW; 4AD1063E074B085E CRC64;
MVTRLRLVSR SSRYATVKFT DSVSACSCRR LFSASTDPEP ESQPEQAPPT NPVTGDEKLR
NLRVLLQQNR IETARGVLSS LLRSDSTPFA SPKELFSAFS LSSPSLKHDF SYLLLSVLLN
ESKMISEAAD LFFALRNEGI YPSSDSLTLL LDHLVKTKQF RVTINVFLNI LESDFRPSKF
MYGKAIQAAV KLSDVGKGLE LFNRMKHDRI YPSVFIYNVL IDGLCKGKRM NDAEQLFDEM
LARRLLPSLI TYNTLIDGYC KAGNPEKSFK VRERMKADHI EPSLITFNTL LKGLFKAGMV
EDAENVLKEM KDLGFVPDAF TFSILFDGYS SNEKAEAALG VYETAVDSGV KMNAYTCSIL
LNALCKEGKI EKAEEILGRE MAKGLVPNEV IYNTMIDGYC RKGDLVGARM KIEAMEKQGM
KPDHLAYNCL IRRFCELGEM ENAEKEVNKM KLKGVSPSVE TYNILIGGYG RKYEFDKCFD
ILKEMEDNGT MPNVVSYGTL INCLCKGSKL LEAQIVKRDM EDRGVSPKVR IYNMLIDGCC
SKGKIEDAFR FSKEMLKKGI ELNLVTYNTL IDGLSMTGKL SEAEDLLLEI SRKGLKPDVF
TYNSLISGYG FAGNVQRCIA LYEEMKRSGI KPTLKTYHLL ISLCTKEGIE LTERLFGEMS
LKPDLLVYNG VLHCYAVHGD MEKAFNLQKQ MIEKSIGLDK TTYNSLILGQ LKVGKLCEVR
SLIDEMNARE MEPEADTYNI IVKGHCEVKD YMSAYVWYRE MQEKGFLLDV CIGNELVSGL
KEEWRSKEAE IVISEMNGRM LGDVTVDEDL SATEKL
