ID   PP377_ARATH             Reviewed;         822 AA.
AC   Q9LYV3;
DT   10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2000, sequence version 1.
DT   25-MAY-2022, entry version 113.
DE   RecName: Full=Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial;
DE   Flags: Precursor;
GN   Name=PCMP-H89; OrderedLocusNames=At5g13230; ORFNames=T31B5_50;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130714; DOI=10.1038/35048507;
RA   Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA   Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA   Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA   Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA   Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA   O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA   Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA   Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA   Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA   Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA   Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA   Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA   Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA   Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA   Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA   Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA   McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA   Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA   Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA   Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA   Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA   Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA   Bevan M., Fransz P.F.;
RT   "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL   Nature 408:823-826(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AL163491; CAB86630.1; -; Genomic_DNA.
DR   EMBL; CP002688; AED91869.1; -; Genomic_DNA.
DR   PIR; T48570; T48570.
DR   RefSeq; NP_196827.1; NM_121326.2.
DR   AlphaFoldDB; Q9LYV3; -.
DR   SMR; Q9LYV3; -.
DR   PaxDb; Q9LYV3; -.
DR   PRIDE; Q9LYV3; -.
DR   ProteomicsDB; 249006; -.
DR   EnsemblPlants; AT5G13230.1; AT5G13230.1; AT5G13230.
DR   GeneID; 831163; -.
DR   Gramene; AT5G13230.1; AT5G13230.1; AT5G13230.
DR   KEGG; ath:AT5G13230; -.
DR   Araport; AT5G13230; -.
DR   TAIR; locus:2183931; AT5G13230.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_15_1_1; -.
DR   InParanoid; Q9LYV3; -.
DR   OMA; GYSMHGL; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q9LYV3; -.
DR   PRO; PR:Q9LYV3; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q9LYV3; baseline and differential.
DR   Genevisible; Q9LYV3; AT.
DR   GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   Gene3D; 1.25.40.10; -; 5.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF01535; PPR; 7.
DR   Pfam; PF13041; PPR_2; 2.
DR   TIGRFAMs; TIGR00756; PPR; 4.
DR   PROSITE; PS51375; PPR; 15.
PE   3: Inferred from homology;
KW   Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..70
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           71..822
FT                   /note="Putative pentatricopeptide repeat-containing protein
FT                   At5g13230, mitochondrial"
FT                   /id="PRO_0000363514"
FT   REPEAT          48..82
FT                   /note="PPR 1"
FT   REPEAT          83..117
FT                   /note="PPR 2"
FT   REPEAT          145..179
FT                   /note="PPR 3"
FT   REPEAT          180..210
FT                   /note="PPR 4"
FT   REPEAT          211..245
FT                   /note="PPR 5"
FT   REPEAT          246..280
FT                   /note="PPR 6"
FT   REPEAT          281..311
FT                   /note="PPR 7"
FT   REPEAT          312..346
FT                   /note="PPR 8"
FT   REPEAT          347..381
FT                   /note="PPR 9"
FT   REPEAT          382..416
FT                   /note="PPR 10"
FT   REPEAT          417..447
FT                   /note="PPR 11"
FT   REPEAT          448..482
FT                   /note="PPR 12"
FT   REPEAT          483..513
FT                   /note="PPR 13"
FT   REPEAT          514..548
FT                   /note="PPR 14"
FT   REPEAT          549..584
FT                   /note="PPR 15"
FT   REPEAT          585..619
FT                   /note="PPR 16"
FT   REGION          620..695
FT                   /note="Type E motif"
FT   REGION          696..726
FT                   /note="Type E(+) motif"
FT   REGION          727..822
FT                   /note="Type DYW motif"
SQ   SEQUENCE   822 AA;  91439 MW;  8CA5AAC54D10AAA6 CRC64;
     MIVFMRIIHV AQTRRLMIRC NRIRQCGFSV KTAALDLESS DSIIPGLDSH AYGAMLRRCI
     QKNDPISAKA IHCDILKKGS CLDLFATNIL LNAYVKAGFD KDALNLFDEM PERNNVSFVT
     LAQGYACQDP IGLYSRLHRE GHELNPHVFT SFLKLFVSLD KAEICPWLHS PIVKLGYDSN
     AFVGAALINA YSVCGSVDSA RTVFEGILCK DIVVWAGIVS CYVENGYFED SLKLLSCMRM
     AGFMPNNYTF DTALKASIGL GAFDFAKGVH GQILKTCYVL DPRVGVGLLQ LYTQLGDMSD
     AFKVFNEMPK NDVVPWSFMI ARFCQNGFCN EAVDLFIRMR EAFVVPNEFT LSSILNGCAI
     GKCSGLGEQL HGLVVKVGFD LDIYVSNALI DVYAKCEKMD TAVKLFAELS SKNEVSWNTV
     IVGYENLGEG GKAFSMFREA LRNQVSVTEV TFSSALGACA SLASMDLGVQ VHGLAIKTNN
     AKKVAVSNSL IDMYAKCGDI KFAQSVFNEM ETIDVASWNA LISGYSTHGL GRQALRILDI
     MKDRDCKPNG LTFLGVLSGC SNAGLIDQGQ ECFESMIRDH GIEPCLEHYT CMVRLLGRSG
     QLDKAMKLIE GIPYEPSVMI WRAMLSASMN QNNEEFARRS AEEILKINPK DEATYVLVSN
     MYAGAKQWAN VASIRKSMKE MGVKKEPGLS WIEHQGDVHY FSVGLSDHPD MKLINGMLEW
     LNMKATRAGY VPDRNAVLLD MDDEEKDKRL WVHSERLALA YGLVRMPSSR NRILIMKNLR
     ICSDCHSAMK VISSIVQRDL VIRDMNRFHH FHAGVCSCGD HW