ID   PP378_ARATH             Reviewed;         752 AA.
AC   Q9LYU9;
DT   10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2000, sequence version 1.
DT   25-MAY-2022, entry version 118.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At5g13270, chloroplastic;
DE   Flags: Precursor;
GN   Name=PCMP-H90; OrderedLocusNames=At5g13270; ORFNames=T31B5_90;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130714; DOI=10.1038/35048507;
RA   Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA   Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA   Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA   Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA   Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA   O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA   Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA   Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA   Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA   Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA   Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA   Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA   Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA   Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA   Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA   Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA   McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA   Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA   Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA   Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA   Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA   Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA   Bevan M., Fransz P.F.;
RT   "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL   Nature 408:823-826(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AL163491; CAB86634.1; -; Genomic_DNA.
DR   EMBL; CP002688; AED91873.1; -; Genomic_DNA.
DR   PIR; T48574; T48574.
DR   RefSeq; NP_196831.1; NM_121330.2.
DR   AlphaFoldDB; Q9LYU9; -.
DR   SMR; Q9LYU9; -.
DR   BioGRID; 16446; 1.
DR   STRING; 3702.AT5G13270.1; -.
DR   PaxDb; Q9LYU9; -.
DR   PRIDE; Q9LYU9; -.
DR   ProteomicsDB; 249262; -.
DR   EnsemblPlants; AT5G13270.1; AT5G13270.1; AT5G13270.
DR   GeneID; 831168; -.
DR   Gramene; AT5G13270.1; AT5G13270.1; AT5G13270.
DR   KEGG; ath:AT5G13270; -.
DR   Araport; AT5G13270; -.
DR   TAIR; locus:2183886; AT5G13270.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_37_8_1; -.
DR   InParanoid; Q9LYU9; -.
DR   OMA; KDCHDFA; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q9LYU9; -.
DR   PRO; PR:Q9LYU9; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q9LYU9; baseline and differential.
DR   Genevisible; Q9LYU9; AT.
DR   GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR   GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IMP:TAIR.
DR   Gene3D; 1.25.40.10; -; 4.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF01535; PPR; 7.
DR   Pfam; PF13041; PPR_2; 2.
DR   TIGRFAMs; TIGR00756; PPR; 5.
DR   PROSITE; PS51375; PPR; 15.
PE   2: Evidence at transcript level;
KW   Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..80
FT                   /note="Chloroplast"
FT                   /evidence="ECO:0000255"
FT   CHAIN           81..752
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At5g13270, chloroplastic"
FT                   /id="PRO_0000363515"
FT   REPEAT          47..81
FT                   /note="PPR 1"
FT   REPEAT          82..116
FT                   /note="PPR 2"
FT   REPEAT          117..147
FT                   /note="PPR 3"
FT   REPEAT          148..182
FT                   /note="PPR 4"
FT   REPEAT          183..217
FT                   /note="PPR 5"
FT   REPEAT          218..248
FT                   /note="PPR 6"
FT   REPEAT          249..283
FT                   /note="PPR 7"
FT   REPEAT          284..318
FT                   /note="PPR 8"
FT   REPEAT          319..349
FT                   /note="PPR 9"
FT   REPEAT          350..384
FT                   /note="PPR 10"
FT   REPEAT          386..420
FT                   /note="PPR 11"
FT   REPEAT          421..451
FT                   /note="PPR 12"
FT   REPEAT          452..486
FT                   /note="PPR 13"
FT   REPEAT          487..522
FT                   /note="PPR 14"
FT   REPEAT          523..553
FT                   /note="PPR 15"
FT   REGION          558..633
FT                   /note="Type E motif"
FT   REGION          634..664
FT                   /note="Type E(+) motif"
FT   REGION          665..752
FT                   /note="Type DYW motif"
SQ   SEQUENCE   752 AA;  84263 MW;  5405C8BC13F1E09C CRC64;
     MTILTVQSSF SSSRVPVIKN ANFDQIPSWV SLKSSTSSPS VKISHKQGQV ENLHLVSLSK
     HRKLNEAFEF LQEMDKAGVS VSSYSYQCLF EACRELRSLS HGRLLHDRMR MGIENPSVLL
     QNCVLQMYCE CRSLEDADKL FDEMSELNAV SRTTMISAYA EQGILDKAVG LFSGMLASGD
     KPPSSMYTTL LKSLVNPRAL DFGRQIHAHV IRAGLCSNTS IETGIVNMYV KCGWLVGAKR
     VFDQMAVKKP VACTGLMVGY TQAGRARDAL KLFVDLVTEG VEWDSFVFSV VLKACASLEE
     LNLGKQIHAC VAKLGLESEV SVGTPLVDFY IKCSSFESAC RAFQEIREPN DVSWSAIISG
     YCQMSQFEEA VKTFKSLRSK NASILNSFTY TSIFQACSVL ADCNIGGQVH ADAIKRSLIG
     SQYGESALIT MYSKCGCLDD ANEVFESMDN PDIVAWTAFI SGHAYYGNAS EALRLFEKMV
     SCGMKPNSVT FIAVLTACSH AGLVEQGKHC LDTMLRKYNV APTIDHYDCM IDIYARSGLL
     DEALKFMKNM PFEPDAMSWK CFLSGCWTHK NLELGEIAGE ELRQLDPEDT AGYVLPFNLY
     TWAGKWEEAA EMMKLMNERM LKKELSCSWI QEKGKIHRFI VGDKHHPQTQ EIYEKLKEFD
     GFMEGDMFQC NMTERREQLL DHSERLAIAF GLISVHGNAP APIKVFKNLR ACPDCHEFAK
     HVSLVTGHEI VIRDSRRFHH FKEGKCSCND YW